Hb_004712_020

Information

Type -
Description -
Location Contig4712: 15819-17758
Sequence    

Annotation

kegg
ID mdm:103432057
description premnaspirodiene oxygenase-like
nr
ID KDP39025.1
description hypothetical protein JCGZ_00782 [Jatropha curcas]
swissprot
ID Q42716
description Cytochrome P450 71A8 OS=Mentha piperita GN=CYP71A8 PE=3 SV=1
trembl
ID I1N0C5
description Uncharacterized protein OS=Glycine max PE=3 SV=1
Gene Ontology
ID GO:0005506
description premnaspirodiene oxygenase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44270: 15955-17449 , PASA_asmbl_44271: 17473-17686
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004712_020 0.0 - - hypothetical protein JCGZ_00782 [Jatropha curcas]
2 Hb_012807_140 0.0457184265 transcription factor TF Family: MYB hypothetical protein POPTR_0009s01270g [Populus trichocarpa]
3 Hb_001105_200 0.0716945548 - - catalytic, putative [Ricinus communis]
4 Hb_010926_030 0.1011510384 - - hypothetical protein CISIN_1g037967mg, partial [Citrus sinensis]
5 Hb_002122_040 0.102787978 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
6 Hb_008692_020 0.1039808797 - - -
7 Hb_002870_010 0.1059643408 - - PREDICTED: uncharacterized protein LOC105649339 [Jatropha curcas]
8 Hb_009642_010 0.1075612139 - - Disease resistance protein RFL1, putative [Ricinus communis]
9 Hb_004881_060 0.1117608028 transcription factor TF Family: WRKY hypothetical protein POPTR_0005s22480g [Populus trichocarpa]
10 Hb_009510_060 0.1132117787 - - -
11 Hb_001158_080 0.1190379157 - - PREDICTED: omega-hydroxypalmitate O-feruloyl transferase [Jatropha curcas]
12 Hb_001863_080 0.1230044044 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-6-like [Jatropha curcas]
13 Hb_000487_240 0.1246169761 - - PREDICTED: CYSTM1 family protein B [Cucumis melo]
14 Hb_008140_060 0.1281866725 - - Cytochrome P450, putative [Theobroma cacao]
15 Hb_088916_010 0.1286940043 - - PREDICTED: receptor-like serine/threonine-protein kinase At4g25390 [Jatropha curcas]
16 Hb_000205_210 0.1313008792 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like isoform X1 [Citrus sinensis]
17 Hb_000844_100 0.1331356245 - - hypothetical protein JCGZ_04351 [Jatropha curcas]
18 Hb_184942_010 0.1369478657 - - STS14 protein precursor, putative [Ricinus communis]
19 Hb_001377_010 0.1371644002 - - PREDICTED: transcription factor TRY-like [Jatropha curcas]
20 Hb_000934_290 0.1374082103 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004712_020 Hb_004712_020 Hb_012807_140 Hb_012807_140 Hb_004712_020--Hb_012807_140 Hb_001105_200 Hb_001105_200 Hb_004712_020--Hb_001105_200 Hb_010926_030 Hb_010926_030 Hb_004712_020--Hb_010926_030 Hb_002122_040 Hb_002122_040 Hb_004712_020--Hb_002122_040 Hb_008692_020 Hb_008692_020 Hb_004712_020--Hb_008692_020 Hb_002870_010 Hb_002870_010 Hb_004712_020--Hb_002870_010 Hb_012807_140--Hb_001105_200 Hb_012807_140--Hb_002870_010 Hb_012807_140--Hb_002122_040 Hb_000487_240 Hb_000487_240 Hb_012807_140--Hb_000487_240 Hb_009642_010 Hb_009642_010 Hb_012807_140--Hb_009642_010 Hb_001105_200--Hb_009642_010 Hb_001105_200--Hb_002122_040 Hb_000205_210 Hb_000205_210 Hb_001105_200--Hb_000205_210 Hb_004881_060 Hb_004881_060 Hb_001105_200--Hb_004881_060 Hb_009510_060 Hb_009510_060 Hb_010926_030--Hb_009510_060 Hb_000149_090 Hb_000149_090 Hb_010926_030--Hb_000149_090 Hb_010926_030--Hb_012807_140 Hb_010926_030--Hb_001105_200 Hb_010926_030--Hb_002122_040 Hb_002122_040--Hb_009642_010 Hb_002122_040--Hb_008692_020 Hb_002122_040--Hb_002870_010 Hb_010761_030 Hb_010761_030 Hb_008692_020--Hb_010761_030 Hb_031931_030 Hb_031931_030 Hb_008692_020--Hb_031931_030 Hb_008692_020--Hb_002870_010 Hb_008692_020--Hb_001105_200 Hb_001377_010 Hb_001377_010 Hb_002870_010--Hb_001377_010 Hb_001514_070 Hb_001514_070 Hb_002870_010--Hb_001514_070 Hb_001136_030 Hb_001136_030 Hb_002870_010--Hb_001136_030 Hb_001104_210 Hb_001104_210 Hb_002870_010--Hb_001104_210 Hb_003090_180 Hb_003090_180 Hb_002870_010--Hb_003090_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.35032 0.165025 2.36506 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0246015 0.0193566 0 7.87642 1.26511

CAGE analysis