Hb_004712_090

Information

Type -
Description -
Location Contig4712: 44898-46052
Sequence    

Annotation

kegg
ID rcu:RCOM_0520780
description Serine acetyltransferase 3, mitochondrial precursor, putative (EC:2.3.1.30)
nr
ID XP_002522723.1
description Serine acetyltransferase 3, mitochondrial precursor, putative [Ricinus communis]
swissprot
ID Q39218
description Serine acetyltransferase 3, mitochondrial OS=Arabidopsis thaliana GN=SAT3 PE=1 SV=3
trembl
ID B9S9Q4
description Serine acetyltransferase 3, mitochondrial, putative OS=Ricinus communis GN=RCOM_0520780 PE=4 SV=1
Gene Ontology
ID GO:0005737
description serine acetyltransferase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44275: 44612-46168
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004712_090 0.0 - - Serine acetyltransferase 3, mitochondrial precursor, putative [Ricinus communis]
2 Hb_000134_260 0.089997807 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
3 Hb_000392_170 0.1307072012 - - PREDICTED: protein PHYTOCHROME KINASE SUBSTRATE 3 [Jatropha curcas]
4 Hb_004970_070 0.1319953176 - - hypothetical protein POPTR_0002s12620g [Populus trichocarpa]
5 Hb_000059_030 0.1340167069 - - PREDICTED: chaperone protein dnaJ 10 [Jatropha curcas]
6 Hb_000856_230 0.1354050876 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase FEI 2 [Jatropha curcas]
7 Hb_000308_010 0.1359918149 - - PREDICTED: uncharacterized protein LOC105639684 [Jatropha curcas]
8 Hb_001638_120 0.1388395073 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 9 [Jatropha curcas]
9 Hb_003688_220 0.1390071974 - - unknown [Populus trichocarpa]
10 Hb_004551_010 0.1391588611 - - tryptophan synthase beta chain, putative [Ricinus communis]
11 Hb_002200_020 0.1398319386 transcription factor TF Family: C2C2-Dof hypothetical protein RCOM_0137680 [Ricinus communis]
12 Hb_000395_120 0.1400939314 - - Stellacyanin, putative [Ricinus communis]
13 Hb_001541_190 0.1412580555 - - PREDICTED: uncharacterized protein LOC105644700 [Jatropha curcas]
14 Hb_011918_030 0.1413544182 - - PREDICTED: nudix hydrolase 4 [Jatropha curcas]
15 Hb_002048_100 0.14155882 - - PREDICTED: probable glucan endo-1,3-beta-glucosidase A6 [Jatropha curcas]
16 Hb_031266_020 0.1416921181 - - PREDICTED: calcineurin B-like protein 9 isoform X1 [Jatropha curcas]
17 Hb_009907_020 0.1431084176 - - hypothetical protein CICLE_v10009323mg [Citrus clementina]
18 Hb_002311_500 0.1467859653 - - PREDICTED: uncharacterized protein LOC105643461 [Jatropha curcas]
19 Hb_001430_010 0.1473175725 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 isoform X2 [Jatropha curcas]
20 Hb_004223_080 0.1492678002 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_004712_090 Hb_004712_090 Hb_000134_260 Hb_000134_260 Hb_004712_090--Hb_000134_260 Hb_000392_170 Hb_000392_170 Hb_004712_090--Hb_000392_170 Hb_004970_070 Hb_004970_070 Hb_004712_090--Hb_004970_070 Hb_000059_030 Hb_000059_030 Hb_004712_090--Hb_000059_030 Hb_000856_230 Hb_000856_230 Hb_004712_090--Hb_000856_230 Hb_000308_010 Hb_000308_010 Hb_004712_090--Hb_000308_010 Hb_004551_010 Hb_004551_010 Hb_000134_260--Hb_004551_010 Hb_003688_220 Hb_003688_220 Hb_000134_260--Hb_003688_220 Hb_002374_200 Hb_002374_200 Hb_000134_260--Hb_002374_200 Hb_011918_030 Hb_011918_030 Hb_000134_260--Hb_011918_030 Hb_000035_140 Hb_000035_140 Hb_000134_260--Hb_000035_140 Hb_004316_020 Hb_004316_020 Hb_000392_170--Hb_004316_020 Hb_002311_500 Hb_002311_500 Hb_000392_170--Hb_002311_500 Hb_002200_020 Hb_002200_020 Hb_000392_170--Hb_002200_020 Hb_004223_080 Hb_004223_080 Hb_000392_170--Hb_004223_080 Hb_000392_170--Hb_000856_230 Hb_000200_270 Hb_000200_270 Hb_000392_170--Hb_000200_270 Hb_007904_290 Hb_007904_290 Hb_004970_070--Hb_007904_290 Hb_002048_100 Hb_002048_100 Hb_004970_070--Hb_002048_100 Hb_001040_060 Hb_001040_060 Hb_004970_070--Hb_001040_060 Hb_001541_190 Hb_001541_190 Hb_004970_070--Hb_001541_190 Hb_004970_070--Hb_000134_260 Hb_001025_140 Hb_001025_140 Hb_000059_030--Hb_001025_140 Hb_000059_030--Hb_000392_170 Hb_000438_200 Hb_000438_200 Hb_000059_030--Hb_000438_200 Hb_000059_030--Hb_000856_230 Hb_115962_010 Hb_115962_010 Hb_000059_030--Hb_115962_010 Hb_009421_090 Hb_009421_090 Hb_000059_030--Hb_009421_090 Hb_000856_230--Hb_009421_090 Hb_014700_020 Hb_014700_020 Hb_000856_230--Hb_014700_020 Hb_000856_230--Hb_000200_270 Hb_002540_100 Hb_002540_100 Hb_000856_230--Hb_002540_100 Hb_000856_230--Hb_004316_020 Hb_000371_030 Hb_000371_030 Hb_000856_230--Hb_000371_030 Hb_008173_130 Hb_008173_130 Hb_000308_010--Hb_008173_130 Hb_000308_010--Hb_011918_030 Hb_000308_010--Hb_000134_260 Hb_015531_010 Hb_015531_010 Hb_000308_010--Hb_015531_010 Hb_002965_070 Hb_002965_070 Hb_000308_010--Hb_002965_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.96816 90.8496 230.306 84.1756 3.65885 3.42783
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.27429 1.13599 1.92292 16.6489 20.9057

CAGE analysis