Hb_004712_130

Information

Type -
Description -
Location Contig4712: 71935-78675
Sequence    

Annotation

kegg
ID rcu:RCOM_0521230
description DNA binding protein, putative
nr
ID XP_012070991.1
description PREDICTED: uncharacterized protein LOC105633074 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KSU4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01018 PE=4 SV=1
Gene Ontology
ID GO:0003682
description dna binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44276: 71937-78530
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004712_130 0.0 - - PREDICTED: uncharacterized protein LOC105633074 [Jatropha curcas]
2 Hb_000497_300 0.0548954469 - - peroxisomal membrane protein [Hevea brasiliensis]
3 Hb_001999_090 0.0634231432 - - PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic [Jatropha curcas]
4 Hb_010344_050 0.0663422 - - Adagio 1 -like protein [Gossypium arboreum]
5 Hb_027472_070 0.068469746 - - PREDICTED: uncharacterized protein LOC105646172 [Jatropha curcas]
6 Hb_000094_070 0.0713214395 - - PREDICTED: 5'-nucleotidase domain-containing protein 4 isoform X2 [Jatropha curcas]
7 Hb_000366_040 0.0779390942 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
8 Hb_001242_130 0.0782462264 - - PREDICTED: U3 small nucleolar RNA-associated protein 4-like [Jatropha curcas]
9 Hb_000388_090 0.0805251095 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like [Jatropha curcas]
10 Hb_006718_020 0.0810649291 - - PREDICTED: uncharacterized protein LOC105649330 isoform X2 [Jatropha curcas]
11 Hb_000406_140 0.0823248344 - - conserved hypothetical protein [Ricinus communis]
12 Hb_164010_030 0.0860693283 - - PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]
13 Hb_000913_020 0.0870996828 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
14 Hb_002063_020 0.0873013479 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17140 [Jatropha curcas]
15 Hb_002099_080 0.0898338498 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Jatropha curcas]
16 Hb_001629_030 0.0898759792 - - PAP-specific phosphatase HAL2-like family protein [Populus trichocarpa]
17 Hb_001157_240 0.0907502645 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Jatropha curcas]
18 Hb_001352_020 0.0908087887 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 8, mitochondrial-like [Jatropha curcas]
19 Hb_000479_140 0.0912820113 - - TPA: hypothetical protein ZEAMMB73_881803, partial [Zea mays]
20 Hb_002235_040 0.0924563841 - - PREDICTED: pentatricopeptide repeat-containing protein At3g29230 [Jatropha curcas]

Gene co-expression network

sample Hb_004712_130 Hb_004712_130 Hb_000497_300 Hb_000497_300 Hb_004712_130--Hb_000497_300 Hb_001999_090 Hb_001999_090 Hb_004712_130--Hb_001999_090 Hb_010344_050 Hb_010344_050 Hb_004712_130--Hb_010344_050 Hb_027472_070 Hb_027472_070 Hb_004712_130--Hb_027472_070 Hb_000094_070 Hb_000094_070 Hb_004712_130--Hb_000094_070 Hb_000366_040 Hb_000366_040 Hb_004712_130--Hb_000366_040 Hb_000497_300--Hb_010344_050 Hb_001352_020 Hb_001352_020 Hb_000497_300--Hb_001352_020 Hb_000116_260 Hb_000116_260 Hb_000497_300--Hb_000116_260 Hb_164010_030 Hb_164010_030 Hb_000497_300--Hb_164010_030 Hb_001789_150 Hb_001789_150 Hb_000497_300--Hb_001789_150 Hb_002235_040 Hb_002235_040 Hb_001999_090--Hb_002235_040 Hb_006718_020 Hb_006718_020 Hb_001999_090--Hb_006718_020 Hb_007441_220 Hb_007441_220 Hb_001999_090--Hb_007441_220 Hb_002316_160 Hb_002316_160 Hb_001999_090--Hb_002316_160 Hb_001999_090--Hb_027472_070 Hb_010344_050--Hb_001352_020 Hb_007044_050 Hb_007044_050 Hb_010344_050--Hb_007044_050 Hb_007386_040 Hb_007386_040 Hb_010344_050--Hb_007386_040 Hb_000505_150 Hb_000505_150 Hb_010344_050--Hb_000505_150 Hb_012725_060 Hb_012725_060 Hb_027472_070--Hb_012725_060 Hb_006816_280 Hb_006816_280 Hb_027472_070--Hb_006816_280 Hb_001242_130 Hb_001242_130 Hb_027472_070--Hb_001242_130 Hb_004787_050 Hb_004787_050 Hb_027472_070--Hb_004787_050 Hb_003125_170 Hb_003125_170 Hb_000094_070--Hb_003125_170 Hb_000181_340 Hb_000181_340 Hb_000094_070--Hb_000181_340 Hb_001157_240 Hb_001157_240 Hb_000094_070--Hb_001157_240 Hb_000039_150 Hb_000039_150 Hb_000094_070--Hb_000039_150 Hb_000094_070--Hb_000366_040 Hb_002063_020 Hb_002063_020 Hb_000366_040--Hb_002063_020 Hb_000352_190 Hb_000352_190 Hb_000366_040--Hb_000352_190 Hb_000388_090 Hb_000388_090 Hb_000366_040--Hb_000388_090 Hb_002099_080 Hb_002099_080 Hb_000366_040--Hb_002099_080 Hb_005736_020 Hb_005736_020 Hb_000366_040--Hb_005736_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.1056 21.1361 14.2842 20.9416 13.1481 18.7251
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.3514 19.7127 42.8108 25.4407 33.7209

CAGE analysis