Hb_004712_160

Information

Type -
Description -
Location Contig4712: 104739-107108
Sequence    

Annotation

kegg
ID cic:CICLE_v10024612mg
description hypothetical protein
nr
ID XP_006443419.1
description hypothetical protein CICLE_v10024612mg [Citrus clementina]
swissprot
ID C0LGQ5
description LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1
trembl
ID V4VTZ9
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024612mg PE=4 SV=1
Gene Ontology
ID GO:0007165
description lrr receptor-like serine threonine-protein kinase gso1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44277: 104824-107449
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004712_160 0.0 - - hypothetical protein CICLE_v10024612mg [Citrus clementina]
2 Hb_001898_010 0.1133447621 - - hypothetical protein JCGZ_00222 [Jatropha curcas]
3 Hb_005375_070 0.1182931458 transcription factor TF Family: MYB-related PREDICTED: protein LHY [Jatropha curcas]
4 Hb_000805_040 0.1184826597 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
5 Hb_002122_030 0.1255592924 - - -
6 Hb_005000_050 0.1264694161 - - PREDICTED: tetraspanin-2 [Jatropha curcas]
7 Hb_007574_050 0.1303004834 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 [Jatropha curcas]
8 Hb_007120_010 0.131007277 - - PREDICTED: uncharacterized protein LOC105634737 [Jatropha curcas]
9 Hb_011360_090 0.1319543438 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
10 Hb_000610_060 0.1320085205 - - PREDICTED: CO(2)-response secreted protease-like [Jatropha curcas]
11 Hb_001989_060 0.1328802032 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105634562 isoform X2 [Jatropha curcas]
12 Hb_011930_120 0.1350933843 - - PREDICTED: uncharacterized protein LOC105649794 isoform X1 [Jatropha curcas]
13 Hb_000649_300 0.1378526668 transcription factor TF Family: Tify JAZ9 [Hevea brasiliensis]
14 Hb_098160_010 0.1378974014 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
15 Hb_000451_040 0.1396535533 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002910_010 0.1403266589 - - PREDICTED: uncharacterized protein LOC105635519 [Jatropha curcas]
17 Hb_003216_050 0.1403500246 - - PREDICTED: OBERON-like protein [Jatropha curcas]
18 Hb_001102_090 0.1413165346 - - PREDICTED: mitogen-activated protein kinase 19 [Jatropha curcas]
19 Hb_012787_040 0.1425330765 - - PREDICTED: uncharacterized protein LOC105649794 isoform X2 [Jatropha curcas]
20 Hb_008103_100 0.1428854456 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPS2 [Jatropha curcas]

Gene co-expression network

sample Hb_004712_160 Hb_004712_160 Hb_001898_010 Hb_001898_010 Hb_004712_160--Hb_001898_010 Hb_005375_070 Hb_005375_070 Hb_004712_160--Hb_005375_070 Hb_000805_040 Hb_000805_040 Hb_004712_160--Hb_000805_040 Hb_002122_030 Hb_002122_030 Hb_004712_160--Hb_002122_030 Hb_005000_050 Hb_005000_050 Hb_004712_160--Hb_005000_050 Hb_007574_050 Hb_007574_050 Hb_004712_160--Hb_007574_050 Hb_001898_010--Hb_005375_070 Hb_000402_030 Hb_000402_030 Hb_001898_010--Hb_000402_030 Hb_001898_010--Hb_007574_050 Hb_098160_010 Hb_098160_010 Hb_001898_010--Hb_098160_010 Hb_009476_110 Hb_009476_110 Hb_001898_010--Hb_009476_110 Hb_005375_070--Hb_000402_030 Hb_017857_010 Hb_017857_010 Hb_005375_070--Hb_017857_010 Hb_005375_070--Hb_005000_050 Hb_002343_020 Hb_002343_020 Hb_005375_070--Hb_002343_020 Hb_149484_010 Hb_149484_010 Hb_005375_070--Hb_149484_010 Hb_001863_270 Hb_001863_270 Hb_000805_040--Hb_001863_270 Hb_011360_090 Hb_011360_090 Hb_000805_040--Hb_011360_090 Hb_000009_200 Hb_000009_200 Hb_000805_040--Hb_000009_200 Hb_000373_250 Hb_000373_250 Hb_000805_040--Hb_000373_250 Hb_007120_010 Hb_007120_010 Hb_000805_040--Hb_007120_010 Hb_011930_120 Hb_011930_120 Hb_000805_040--Hb_011930_120 Hb_001246_160 Hb_001246_160 Hb_002122_030--Hb_001246_160 Hb_002122_030--Hb_000009_200 Hb_002122_030--Hb_000805_040 Hb_005714_100 Hb_005714_100 Hb_002122_030--Hb_005714_100 Hb_011689_100 Hb_011689_100 Hb_002122_030--Hb_011689_100 Hb_005000_050--Hb_149484_010 Hb_001951_240 Hb_001951_240 Hb_005000_050--Hb_001951_240 Hb_023386_050 Hb_023386_050 Hb_005000_050--Hb_023386_050 Hb_005000_050--Hb_007574_050 Hb_007574_050--Hb_098160_010 Hb_007574_050--Hb_005375_070 Hb_002936_030 Hb_002936_030 Hb_007574_050--Hb_002936_030 Hb_007574_050--Hb_000402_030 Hb_001405_060 Hb_001405_060 Hb_007574_050--Hb_001405_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.20332 25.617 14.2437 9.28306 1.37464 2.32051
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.49804 1.04616 0.280575 3.57064 3.81628

CAGE analysis