Hb_004712_200

Information

Type -
Description -
Location Contig4712: 116414-118588
Sequence    

Annotation

kegg
ID cic:CICLE_v10010292mg
description hypothetical protein
nr
ID XP_006452568.1
description hypothetical protein CICLE_v10010292mg [Citrus clementina]
swissprot
ID Q94EG9
description Zinc transporter 11 OS=Arabidopsis thaliana GN=ZIP11 PE=2 SV=1
trembl
ID V4TYZ6
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10010292mg PE=4 SV=1
Gene Ontology
ID GO:0016020
description zinc transporter 11 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44281: 116476-117489 , PASA_asmbl_44282: 117232-118415
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004712_200 0.0 - - hypothetical protein CICLE_v10010292mg [Citrus clementina]
2 Hb_000966_040 0.0976909081 - - hypothetical protein JCGZ_01642 [Jatropha curcas]
3 Hb_001377_060 0.1230879219 - - PREDICTED: pentatricopeptide repeat-containing protein At4g01030, mitochondrial [Jatropha curcas]
4 Hb_000975_050 0.1275015077 - - PREDICTED: inner membrane protein PPF-1, chloroplastic [Jatropha curcas]
5 Hb_001266_160 0.1315211761 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
6 Hb_009692_040 0.1347814091 - - PREDICTED: peptide chain release factor PrfB3, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_000193_220 0.1354142891 - - PREDICTED: ribulose-phosphate 3-epimerase, chloroplastic [Jatropha curcas]
8 Hb_000359_160 0.1374484436 - - PREDICTED: protein CAJ1 [Jatropha curcas]
9 Hb_002960_040 0.1383909995 - - PREDICTED: endoplasmin homolog [Jatropha curcas]
10 Hb_001907_080 0.1389092232 - - PREDICTED: uncharacterized protein LOC105628749 [Jatropha curcas]
11 Hb_002835_090 0.1430799698 - - RecName: Full=Elongation factor Tu, chloroplastic; Short=EF-Tu; Flags: Precursor [Glycine max]
12 Hb_000038_020 0.1454714938 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 2, chloroplastic [Jatropha curcas]
13 Hb_005977_060 0.1455509348 - - conserved hypothetical protein [Ricinus communis]
14 Hb_007982_040 0.1460336382 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
15 Hb_000035_340 0.1460715962 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000208_270 0.1461372955 - - PREDICTED: malate dehydrogenase [NADP], chloroplastic [Jatropha curcas]
17 Hb_000300_680 0.1489514977 - - PREDICTED: uncharacterized protein LOC105632625 isoform X1 [Jatropha curcas]
18 Hb_000359_070 0.1489664992 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 2, chloroplastic [Jatropha curcas]
19 Hb_000439_020 0.149431784 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 3-like [Jatropha curcas]
20 Hb_168031_020 0.1504576941 - - PREDICTED: uncharacterized protein LOC105646684 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_004712_200 Hb_004712_200 Hb_000966_040 Hb_000966_040 Hb_004712_200--Hb_000966_040 Hb_001377_060 Hb_001377_060 Hb_004712_200--Hb_001377_060 Hb_000975_050 Hb_000975_050 Hb_004712_200--Hb_000975_050 Hb_001266_160 Hb_001266_160 Hb_004712_200--Hb_001266_160 Hb_009692_040 Hb_009692_040 Hb_004712_200--Hb_009692_040 Hb_000193_220 Hb_000193_220 Hb_004712_200--Hb_000193_220 Hb_000966_040--Hb_000975_050 Hb_000966_040--Hb_000193_220 Hb_010098_040 Hb_010098_040 Hb_000966_040--Hb_010098_040 Hb_004109_130 Hb_004109_130 Hb_000966_040--Hb_004109_130 Hb_000208_270 Hb_000208_270 Hb_000966_040--Hb_000208_270 Hb_002835_090 Hb_002835_090 Hb_001377_060--Hb_002835_090 Hb_000254_120 Hb_000254_120 Hb_001377_060--Hb_000254_120 Hb_001377_060--Hb_000193_220 Hb_010721_020 Hb_010721_020 Hb_001377_060--Hb_010721_020 Hb_001584_050 Hb_001584_050 Hb_001377_060--Hb_001584_050 Hb_000975_050--Hb_010098_040 Hb_000834_080 Hb_000834_080 Hb_000975_050--Hb_000834_080 Hb_000441_050 Hb_000441_050 Hb_000975_050--Hb_000441_050 Hb_005181_120 Hb_005181_120 Hb_000975_050--Hb_005181_120 Hb_005977_060 Hb_005977_060 Hb_000975_050--Hb_005977_060 Hb_000029_330 Hb_000029_330 Hb_001266_160--Hb_000029_330 Hb_000359_070 Hb_000359_070 Hb_001266_160--Hb_000359_070 Hb_004979_050 Hb_004979_050 Hb_001266_160--Hb_004979_050 Hb_000317_180 Hb_000317_180 Hb_001266_160--Hb_000317_180 Hb_134949_010 Hb_134949_010 Hb_001266_160--Hb_134949_010 Hb_000359_160 Hb_000359_160 Hb_001266_160--Hb_000359_160 Hb_007982_040 Hb_007982_040 Hb_009692_040--Hb_007982_040 Hb_032631_030 Hb_032631_030 Hb_009692_040--Hb_032631_030 Hb_004242_170 Hb_004242_170 Hb_009692_040--Hb_004242_170 Hb_001053_020 Hb_001053_020 Hb_009692_040--Hb_001053_020 Hb_009692_040--Hb_005977_060 Hb_009692_040--Hb_000441_050 Hb_000193_220--Hb_010721_020 Hb_002811_250 Hb_002811_250 Hb_000193_220--Hb_002811_250 Hb_000803_170 Hb_000803_170 Hb_000193_220--Hb_000803_170 Hb_000193_220--Hb_007982_040 Hb_000118_090 Hb_000118_090 Hb_000193_220--Hb_000118_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.75041 4.51981 13.7785 12.9799 2.02524 2.01422
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.55772 0.87535 0.75137 6.70002 54.5888

CAGE analysis