Hb_004712_220

Information

Type -
Description -
Location Contig4712: 130218-130586
Sequence    

Annotation

kegg
ID rcu:RCOM_0522400
description hypothetical protein
nr
ID XP_002522765.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S9U6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0522400 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004712_220 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_005649_060 0.05780533 - - PREDICTED: uncharacterized protein LOC105644161 [Jatropha curcas]
3 Hb_001006_150 0.0620015054 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
4 Hb_001766_160 0.0621003219 - - Serine/threonine-protein kinase SAPK1 [Gossypium arboreum]
5 Hb_002529_120 0.0689435271 - - PREDICTED: cyclin-dependent kinase inhibitor 7-like [Jatropha curcas]
6 Hb_013726_060 0.0750238348 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 [Jatropha curcas]
7 Hb_000531_100 0.0764416277 - - Photosystem I reaction center subunit III, chloroplast precursor, putative [Ricinus communis]
8 Hb_001322_120 0.0769302605 - - nutrient reservoir, putative [Ricinus communis]
9 Hb_000088_230 0.0778459114 - - hypothetical protein POPTR_0013s11340g [Populus trichocarpa]
10 Hb_002871_180 0.0819474048 - - photosystem II 10 kDa polypeptide, chloroplastic [Jatropha curcas]
11 Hb_000115_020 0.0822765492 transcription factor TF Family: C2C2-CO-like zinc finger family protein [Populus trichocarpa]
12 Hb_000445_270 0.0873414175 - - ATP binding protein, putative [Ricinus communis]
13 Hb_117807_020 0.0876656202 - - methyltransferase, putative [Ricinus communis]
14 Hb_000139_310 0.0880118465 - - PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic [Jatropha curcas]
15 Hb_000937_010 0.0901805245 - - conserved hypothetical protein [Ricinus communis]
16 Hb_006570_030 0.0916798999 - - PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic [Jatropha curcas]
17 Hb_002785_030 0.0925280176 - - Polyketide cyclase/dehydrase and lipid transport superfamily protein [Theobroma cacao]
18 Hb_000281_120 0.0925658185 - - protein binding protein, putative [Ricinus communis]
19 Hb_005211_080 0.0928954072 - - hypothetical protein POPTR_0010s13740g [Populus trichocarpa]
20 Hb_001416_130 0.0939114489 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004712_220 Hb_004712_220 Hb_005649_060 Hb_005649_060 Hb_004712_220--Hb_005649_060 Hb_001006_150 Hb_001006_150 Hb_004712_220--Hb_001006_150 Hb_001766_160 Hb_001766_160 Hb_004712_220--Hb_001766_160 Hb_002529_120 Hb_002529_120 Hb_004712_220--Hb_002529_120 Hb_013726_060 Hb_013726_060 Hb_004712_220--Hb_013726_060 Hb_000531_100 Hb_000531_100 Hb_004712_220--Hb_000531_100 Hb_002871_180 Hb_002871_180 Hb_005649_060--Hb_002871_180 Hb_005649_060--Hb_001766_160 Hb_000115_020 Hb_000115_020 Hb_005649_060--Hb_000115_020 Hb_000445_270 Hb_000445_270 Hb_005649_060--Hb_000445_270 Hb_005649_060--Hb_001006_150 Hb_000359_050 Hb_000359_050 Hb_001006_150--Hb_000359_050 Hb_005211_080 Hb_005211_080 Hb_001006_150--Hb_005211_080 Hb_001006_150--Hb_000445_270 Hb_001006_150--Hb_001766_160 Hb_000340_280 Hb_000340_280 Hb_001006_150--Hb_000340_280 Hb_001338_120 Hb_001338_120 Hb_001006_150--Hb_001338_120 Hb_001322_120 Hb_001322_120 Hb_001766_160--Hb_001322_120 Hb_007477_060 Hb_007477_060 Hb_001766_160--Hb_007477_060 Hb_001766_160--Hb_000531_100 Hb_001766_160--Hb_002871_180 Hb_002785_030 Hb_002785_030 Hb_002529_120--Hb_002785_030 Hb_002529_120--Hb_001322_120 Hb_002529_120--Hb_000531_100 Hb_001292_030 Hb_001292_030 Hb_002529_120--Hb_001292_030 Hb_002529_120--Hb_013726_060 Hb_001006_040 Hb_001006_040 Hb_002529_120--Hb_001006_040 Hb_013726_060--Hb_000531_100 Hb_146225_020 Hb_146225_020 Hb_013726_060--Hb_146225_020 Hb_000719_030 Hb_000719_030 Hb_013726_060--Hb_000719_030 Hb_001717_060 Hb_001717_060 Hb_013726_060--Hb_001717_060 Hb_013726_060--Hb_001766_160 Hb_000531_100--Hb_001292_030 Hb_000230_420 Hb_000230_420 Hb_000531_100--Hb_000230_420 Hb_000531_100--Hb_001322_120 Hb_005276_080 Hb_005276_080 Hb_000531_100--Hb_005276_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 6.17405 73.65 15.5759 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.16948 0 0 0.160409 90.3085

CAGE analysis