Hb_004712_230

Information

Type -
Description -
Location Contig4712: 132970-133734
Sequence    

Annotation

kegg
ID pop:POPTR_0001s37520g
description POPTRDRAFT_550196; hypothetical protein
nr
ID XP_012071030.1
description PREDICTED: retrotransposon-like protein 1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L5D4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01046 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44286: 133162-133551
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004712_230 0.0 - - PREDICTED: retrotransposon-like protein 1 [Jatropha curcas]
2 Hb_004631_020 0.0503699579 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
3 Hb_005736_030 0.0635999142 - - thioredoxin m(mitochondrial)-type, putative [Ricinus communis]
4 Hb_011381_120 0.0672318067 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2-like [Jatropha curcas]
5 Hb_002995_060 0.0733662037 - - PREDICTED: alkane hydroxylase MAH1-like [Jatropha curcas]
6 Hb_002818_130 0.0744845256 - - cytochrome P450, putative [Ricinus communis]
7 Hb_003653_030 0.0765328114 - - nucleic acid binding protein, putative [Ricinus communis]
8 Hb_000841_040 0.0771512799 transcription factor TF Family: C2C2-CO-like transcription factor, putative [Ricinus communis]
9 Hb_004920_080 0.0773693299 - - PREDICTED: calvin cycle protein CP12-2, chloroplastic-like [Jatropha curcas]
10 Hb_000009_470 0.0784624603 - - Oxygen-evolving enhancer protein 1, chloroplast precursor, putative [Ricinus communis]
11 Hb_000111_460 0.0787557825 - - PREDICTED: uncharacterized protein LOC105631266 [Jatropha curcas]
12 Hb_003090_050 0.0799549296 - - fructose-1,6-bisphosphatase, putative [Ricinus communis]
13 Hb_000029_390 0.0809038037 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
14 Hb_001310_020 0.0829226157 - - PREDICTED: cyclin-D5-1-like isoform X2 [Jatropha curcas]
15 Hb_009093_020 0.0843300948 - - PREDICTED: uncharacterized protein LOC105642100 [Jatropha curcas]
16 Hb_000029_150 0.0849004711 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000629_110 0.0853323739 - - PREDICTED: protein RTF2 homolog [Jatropha curcas]
18 Hb_000704_020 0.0858966404 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001289_050 0.0869433451 - - hypothetical protein Poptr_cp075 [Populus trichocarpa]
20 Hb_001269_480 0.0869587195 - - PREDICTED: photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_004712_230 Hb_004712_230 Hb_004631_020 Hb_004631_020 Hb_004712_230--Hb_004631_020 Hb_005736_030 Hb_005736_030 Hb_004712_230--Hb_005736_030 Hb_011381_120 Hb_011381_120 Hb_004712_230--Hb_011381_120 Hb_002995_060 Hb_002995_060 Hb_004712_230--Hb_002995_060 Hb_002818_130 Hb_002818_130 Hb_004712_230--Hb_002818_130 Hb_003653_030 Hb_003653_030 Hb_004712_230--Hb_003653_030 Hb_000841_040 Hb_000841_040 Hb_004631_020--Hb_000841_040 Hb_003090_050 Hb_003090_050 Hb_004631_020--Hb_003090_050 Hb_001135_170 Hb_001135_170 Hb_004631_020--Hb_001135_170 Hb_004631_020--Hb_005736_030 Hb_032631_060 Hb_032631_060 Hb_004631_020--Hb_032631_060 Hb_000029_150 Hb_000029_150 Hb_005736_030--Hb_000029_150 Hb_020805_090 Hb_020805_090 Hb_005736_030--Hb_020805_090 Hb_000629_110 Hb_000629_110 Hb_005736_030--Hb_000629_110 Hb_004807_040 Hb_004807_040 Hb_005736_030--Hb_004807_040 Hb_009093_020 Hb_009093_020 Hb_011381_120--Hb_009093_020 Hb_011381_120--Hb_002818_130 Hb_011381_120--Hb_000841_040 Hb_000111_460 Hb_000111_460 Hb_011381_120--Hb_000111_460 Hb_001310_020 Hb_001310_020 Hb_011381_120--Hb_001310_020 Hb_011381_120--Hb_003090_050 Hb_000029_390 Hb_000029_390 Hb_002995_060--Hb_000029_390 Hb_004920_080 Hb_004920_080 Hb_002995_060--Hb_004920_080 Hb_002995_060--Hb_000629_110 Hb_002995_060--Hb_011381_120 Hb_001671_130 Hb_001671_130 Hb_002995_060--Hb_001671_130 Hb_002818_130--Hb_001310_020 Hb_001269_480 Hb_001269_480 Hb_002818_130--Hb_001269_480 Hb_001191_060 Hb_001191_060 Hb_002818_130--Hb_001191_060 Hb_001348_160 Hb_001348_160 Hb_002818_130--Hb_001348_160 Hb_002809_030 Hb_002809_030 Hb_002818_130--Hb_002809_030 Hb_004116_030 Hb_004116_030 Hb_003653_030--Hb_004116_030 Hb_003653_030--Hb_032631_060 Hb_000762_050 Hb_000762_050 Hb_003653_030--Hb_000762_050 Hb_001038_020 Hb_001038_020 Hb_003653_030--Hb_001038_020 Hb_001104_080 Hb_001104_080 Hb_003653_030--Hb_001104_080 Hb_000003_530 Hb_000003_530 Hb_003653_030--Hb_000003_530
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.41905 5.21242 2.49755 0.0312436 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.143291 0 0 0.0456748 22.7362

CAGE analysis