Hb_004713_020

Information

Type -
Description -
Location Contig4713: 17562-19352
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004713_020 0.0 - - -
2 Hb_004068_010 0.1112448992 - - beta-amyrin synthase [Euphorbia tirucalli]
3 Hb_000439_020 0.1953799695 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 3-like [Jatropha curcas]
4 Hb_005779_090 0.2110552265 transcription factor TF Family: ERF hypothetical protein POPTR_0014s05500g [Populus trichocarpa]
5 Hb_007413_030 0.2160298413 - - kinase, putative [Ricinus communis]
6 Hb_015234_010 0.2165023992 - - PREDICTED: oxysterol-binding protein-related protein 4B [Jatropha curcas]
7 Hb_012049_030 0.218657584 - - RNA polymerase beta subunit [Hevea brasiliensis]
8 Hb_007810_070 0.2256472489 - - hypothetical protein VITISV_027174 [Vitis vinifera]
9 Hb_042463_010 0.2281815435 - - cytochrome c oxidase subunit 2-1 (mitochondrion) (mitochondrion) [Brassica juncea var. tumida]
10 Hb_000029_380 0.2285656594 - - conserved hypothetical protein [Ricinus communis]
11 Hb_013420_060 0.2349560792 - - NADH dehydrogenase subunit 7 [Nymphaea sp. Bergthorsson 0401]
12 Hb_001276_050 0.2380233164 desease resistance Gene Name: NB-ARC NBS-LRR resistance-like protein 1O [Medicago truncatula]
13 Hb_003944_010 0.2398665802 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
14 Hb_062192_030 0.2435205464 - - ribosomal protein S1 (mitochondrion) [Hevea brasiliensis]
15 Hb_063718_010 0.2436659319 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003032_090 0.2439130761 - - hypothetical protein POPTR_0018s06450g [Populus trichocarpa]
17 Hb_006040_160 0.2443573949 - - ribosomal protein S12 (mitochondrion) [Hevea brasiliensis]
18 Hb_001085_200 0.2452462948 transcription factor TF Family: ARID PREDICTED: high mobility group B protein 15 [Jatropha curcas]
19 Hb_141708_010 0.2453182663 - - hypothetical protein EUTSA_v10011731mg [Eutrema salsugineum]
20 Hb_062192_020 0.2479558484 - - cytochrome c biogenesis FN (mitochondrion) [Hevea brasiliensis]

Gene co-expression network

sample Hb_004713_020 Hb_004713_020 Hb_004068_010 Hb_004068_010 Hb_004713_020--Hb_004068_010 Hb_000439_020 Hb_000439_020 Hb_004713_020--Hb_000439_020 Hb_005779_090 Hb_005779_090 Hb_004713_020--Hb_005779_090 Hb_007413_030 Hb_007413_030 Hb_004713_020--Hb_007413_030 Hb_015234_010 Hb_015234_010 Hb_004713_020--Hb_015234_010 Hb_012049_030 Hb_012049_030 Hb_004713_020--Hb_012049_030 Hb_004068_010--Hb_015234_010 Hb_042463_010 Hb_042463_010 Hb_004068_010--Hb_042463_010 Hb_001276_050 Hb_001276_050 Hb_004068_010--Hb_001276_050 Hb_004068_010--Hb_000439_020 Hb_004068_010--Hb_005779_090 Hb_004712_200 Hb_004712_200 Hb_000439_020--Hb_004712_200 Hb_006483_120 Hb_006483_120 Hb_000439_020--Hb_006483_120 Hb_010620_030 Hb_010620_030 Hb_000439_020--Hb_010620_030 Hb_010174_100 Hb_010174_100 Hb_000439_020--Hb_010174_100 Hb_000552_010 Hb_000552_010 Hb_000439_020--Hb_000552_010 Hb_000439_020--Hb_042463_010 Hb_003944_010 Hb_003944_010 Hb_005779_090--Hb_003944_010 Hb_000359_160 Hb_000359_160 Hb_005779_090--Hb_000359_160 Hb_063718_010 Hb_063718_010 Hb_005779_090--Hb_063718_010 Hb_005779_090--Hb_007413_030 Hb_013420_060 Hb_013420_060 Hb_005779_090--Hb_013420_060 Hb_004117_320 Hb_004117_320 Hb_005779_090--Hb_004117_320 Hb_007413_030--Hb_063718_010 Hb_002835_090 Hb_002835_090 Hb_007413_030--Hb_002835_090 Hb_003333_040 Hb_003333_040 Hb_007413_030--Hb_003333_040 Hb_010068_090 Hb_010068_090 Hb_007413_030--Hb_010068_090 Hb_007413_030--Hb_000439_020 Hb_008226_010 Hb_008226_010 Hb_015234_010--Hb_008226_010 Hb_015234_010--Hb_001276_050 Hb_001295_080 Hb_001295_080 Hb_015234_010--Hb_001295_080 Hb_080048_030 Hb_080048_030 Hb_015234_010--Hb_080048_030 Hb_001085_200 Hb_001085_200 Hb_015234_010--Hb_001085_200 Hb_189208_080 Hb_189208_080 Hb_015234_010--Hb_189208_080 Hb_000275_100 Hb_000275_100 Hb_012049_030--Hb_000275_100 Hb_189208_030 Hb_189208_030 Hb_012049_030--Hb_189208_030 Hb_012049_030--Hb_003333_040 Hb_004393_040 Hb_004393_040 Hb_012049_030--Hb_004393_040 Hb_012049_030--Hb_007413_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.38363 0.643081 0.275338 2.35262 0.222464 0.426472
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.12691 0.0881018 11.2431

CAGE analysis