Hb_004718_010

Information

Type -
Description -
Location Contig4718: 9822-48617
Sequence    

Annotation

kegg
ID rcu:RCOM_0803480
description zinc finger protein, putative
nr
ID XP_012077469.1
description PREDICTED: uncharacterized protein LOC105638290 [Jatropha curcas]
swissprot
ID Q551A3
description Protein DDB_G0276689 OS=Dictyostelium discoideum GN=DDB_G0276689 PE=4 SV=2
trembl
ID A0A067KGY7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07804 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44291: 10163-10513 , PASA_asmbl_44292: 10543-15309 , PASA_asmbl_44293: 18219-21048 , PASA_asmbl_44294: 21533-22733 , PASA_asmbl_44295: 22993-28428 , PASA_asmbl_44296: 22978-23702 , PASA_asmbl_44297: 28459-29689 , PASA_asmbl_44298: 30229-32262 , PASA_asmbl_44299: 32366-33608 , PASA_asmbl_44301: 35401-48665 , PASA_asmbl_44302: 47081-47504
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004718_010 0.0 - - PREDICTED: uncharacterized protein LOC105638290 [Jatropha curcas]
2 Hb_010578_060 0.0511714939 - - PREDICTED: mediator of RNA polymerase II transcription subunit 14 [Jatropha curcas]
3 Hb_000959_040 0.0630317257 - - PREDICTED: uncharacterized protein LOC105636570 [Jatropha curcas]
4 Hb_001268_350 0.063040717 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105115846 [Populus euphratica]
5 Hb_004543_030 0.0634496084 - - PREDICTED: FIP1[V]-like protein [Jatropha curcas]
6 Hb_002301_080 0.0747270051 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105649589 isoform X2 [Jatropha curcas]
7 Hb_001080_270 0.0747494609 - - PREDICTED: NF-kappa-B-activating protein [Jatropha curcas]
8 Hb_018133_050 0.0753999164 - - PREDICTED: protein MODIFIER OF SNC1 1 [Jatropha curcas]
9 Hb_183963_030 0.0778796838 - - DNA binding protein, putative [Ricinus communis]
10 Hb_002188_110 0.0784008794 desease resistance Gene Name: NB-ARC phosphoprotein phosphatase, putative [Ricinus communis]
11 Hb_111985_080 0.0804554158 - - PREDICTED: pentatricopeptide repeat-containing protein At1g19720 [Jatropha curcas]
12 Hb_000832_130 0.0812342439 - - PREDICTED: pentatricopeptide repeat-containing protein At2g39620 [Jatropha curcas]
13 Hb_004659_080 0.0816545912 - - PREDICTED: SWI/SNF complex subunit SWI3D isoform X1 [Jatropha curcas]
14 Hb_002400_240 0.0823188279 - - PREDICTED: uncharacterized protein LOC105637615 [Jatropha curcas]
15 Hb_000529_260 0.082985725 - - PREDICTED: protein SGT1 homolog At5g65490 [Jatropha curcas]
16 Hb_001247_070 0.0834978385 - - PREDICTED: pentatricopeptide repeat-containing protein At1g56690, mitochondrial [Jatropha curcas]
17 Hb_116929_010 0.0854526876 - - PREDICTED: nuclear-pore anchor isoform X2 [Jatropha curcas]
18 Hb_006252_020 0.0868689127 - - PREDICTED: SET and MYND domain-containing protein 4 isoform X2 [Jatropha curcas]
19 Hb_000072_350 0.0870462013 - - PREDICTED: WPP domain-interacting tail-anchored protein 1 [Jatropha curcas]
20 Hb_007676_100 0.087323281 - - PREDICTED: uncharacterized protein LOC105646857 [Jatropha curcas]

Gene co-expression network

sample Hb_004718_010 Hb_004718_010 Hb_010578_060 Hb_010578_060 Hb_004718_010--Hb_010578_060 Hb_000959_040 Hb_000959_040 Hb_004718_010--Hb_000959_040 Hb_001268_350 Hb_001268_350 Hb_004718_010--Hb_001268_350 Hb_004543_030 Hb_004543_030 Hb_004718_010--Hb_004543_030 Hb_002301_080 Hb_002301_080 Hb_004718_010--Hb_002301_080 Hb_001080_270 Hb_001080_270 Hb_004718_010--Hb_001080_270 Hb_010578_060--Hb_000959_040 Hb_183963_030 Hb_183963_030 Hb_010578_060--Hb_183963_030 Hb_002188_110 Hb_002188_110 Hb_010578_060--Hb_002188_110 Hb_001247_070 Hb_001247_070 Hb_010578_060--Hb_001247_070 Hb_010578_060--Hb_004543_030 Hb_007676_100 Hb_007676_100 Hb_000959_040--Hb_007676_100 Hb_000959_040--Hb_002188_110 Hb_000959_040--Hb_183963_030 Hb_018133_050 Hb_018133_050 Hb_000959_040--Hb_018133_050 Hb_000035_290 Hb_000035_290 Hb_001268_350--Hb_000035_290 Hb_001268_350--Hb_001247_070 Hb_002784_110 Hb_002784_110 Hb_001268_350--Hb_002784_110 Hb_005699_090 Hb_005699_090 Hb_001268_350--Hb_005699_090 Hb_014267_010 Hb_014267_010 Hb_001268_350--Hb_014267_010 Hb_034243_020 Hb_034243_020 Hb_004543_030--Hb_034243_020 Hb_007576_120 Hb_007576_120 Hb_004543_030--Hb_007576_120 Hb_002524_040 Hb_002524_040 Hb_004543_030--Hb_002524_040 Hb_000997_030 Hb_000997_030 Hb_004543_030--Hb_000997_030 Hb_010315_090 Hb_010315_090 Hb_004543_030--Hb_010315_090 Hb_116929_010 Hb_116929_010 Hb_002301_080--Hb_116929_010 Hb_003044_020 Hb_003044_020 Hb_002301_080--Hb_003044_020 Hb_117552_010 Hb_117552_010 Hb_002301_080--Hb_117552_010 Hb_133047_010 Hb_133047_010 Hb_002301_080--Hb_133047_010 Hb_002400_240 Hb_002400_240 Hb_002301_080--Hb_002400_240 Hb_000320_200 Hb_000320_200 Hb_002301_080--Hb_000320_200 Hb_000227_380 Hb_000227_380 Hb_001080_270--Hb_000227_380 Hb_002411_120 Hb_002411_120 Hb_001080_270--Hb_002411_120 Hb_001080_270--Hb_000997_030 Hb_001080_270--Hb_000959_040 Hb_000813_100 Hb_000813_100 Hb_001080_270--Hb_000813_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.46418 10.715 2.22716 2.85566 12.2738 10.3297
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.72505 3.50958 5.74632 6.4691 5.92032

CAGE analysis