Hb_004718_020

Information

Type -
Description -
Location Contig4718: 55786-61657
Sequence    

Annotation

kegg
ID rcu:RCOM_0803500
description Potassium channel KAT3, putative
nr
ID XP_002516596.1
description Potassium channel KAT3, putative [Ricinus communis]
swissprot
ID P92960
description Potassium channel KAT3 OS=Arabidopsis thaliana GN=KAT3 PE=1 SV=1
trembl
ID B9RS77
description Potassium channel KAT3, putative OS=Ricinus communis GN=RCOM_0803500 PE=4 SV=1
Gene Ontology
ID GO:0005783
description potassium channel kat3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44304: 59914-60412 , PASA_asmbl_44305: 60174-61426
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004718_020 0.0 - - Potassium channel KAT3, putative [Ricinus communis]
2 Hb_001184_100 0.1424808884 - - PREDICTED: zinc finger protein 4-like [Populus euphratica]
3 Hb_000472_040 0.1863065334 - - PREDICTED: uncharacterized protein LOC105650670 [Jatropha curcas]
4 Hb_001141_080 0.1968436351 - - PREDICTED: protein RDM1 [Jatropha curcas]
5 Hb_055259_010 0.1976541415 - - -
6 Hb_001946_260 0.1987950204 - - PREDICTED: ribosome biogenesis regulatory protein homolog isoform X1 [Jatropha curcas]
7 Hb_012052_060 0.1997333982 - - hypothetical protein POPTR_0018s10190g [Populus trichocarpa]
8 Hb_011472_040 0.2022513887 - - PREDICTED: clathrin light chain 3 [Jatropha curcas]
9 Hb_001150_040 0.2041794162 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent)-like [Solanum lycopersicum]
10 Hb_000567_200 0.2058013294 - - PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 [Jatropha curcas]
11 Hb_002759_250 0.2059578638 rubber biosynthesis Gene Name: Phosphomevalonate kinase phosphomevalonate kinase [Hevea brasiliensis]
12 Hb_003120_030 0.2061073651 - - PREDICTED: vacuolar protein sorting-associated protein 35B isoform X2 [Jatropha curcas]
13 Hb_002333_080 0.2067807898 transcription factor TF Family: TCP PREDICTED: transcription factor TCP20-like [Populus euphratica]
14 Hb_000300_620 0.2093453528 - - PREDICTED: eukaryotic translation initiation factor NCBP [Jatropha curcas]
15 Hb_002924_050 0.209602401 - - PREDICTED: uncharacterized protein LOC105629366 [Jatropha curcas]
16 Hb_000705_260 0.2114217417 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000203_180 0.2118706475 - - PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 [Jatropha curcas]
18 Hb_000500_090 0.2132374736 - - nucleoside diphosphate kinase 2 [Hevea brasiliensis]
19 Hb_001329_220 0.2138388945 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000510_100 0.2176710775 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_004718_020 Hb_004718_020 Hb_001184_100 Hb_001184_100 Hb_004718_020--Hb_001184_100 Hb_000472_040 Hb_000472_040 Hb_004718_020--Hb_000472_040 Hb_001141_080 Hb_001141_080 Hb_004718_020--Hb_001141_080 Hb_055259_010 Hb_055259_010 Hb_004718_020--Hb_055259_010 Hb_001946_260 Hb_001946_260 Hb_004718_020--Hb_001946_260 Hb_012052_060 Hb_012052_060 Hb_004718_020--Hb_012052_060 Hb_001329_220 Hb_001329_220 Hb_001184_100--Hb_001329_220 Hb_011472_040 Hb_011472_040 Hb_001184_100--Hb_011472_040 Hb_000500_090 Hb_000500_090 Hb_001184_100--Hb_000500_090 Hb_003120_030 Hb_003120_030 Hb_001184_100--Hb_003120_030 Hb_000272_100 Hb_000272_100 Hb_001184_100--Hb_000272_100 Hb_002333_080 Hb_002333_080 Hb_001184_100--Hb_002333_080 Hb_116701_020 Hb_116701_020 Hb_000472_040--Hb_116701_020 Hb_000472_040--Hb_001141_080 Hb_001386_130 Hb_001386_130 Hb_000472_040--Hb_001386_130 Hb_000567_200 Hb_000567_200 Hb_000472_040--Hb_000567_200 Hb_002924_050 Hb_002924_050 Hb_000472_040--Hb_002924_050 Hb_003428_110 Hb_003428_110 Hb_000472_040--Hb_003428_110 Hb_005147_110 Hb_005147_110 Hb_001141_080--Hb_005147_110 Hb_002249_140 Hb_002249_140 Hb_001141_080--Hb_002249_140 Hb_009382_020 Hb_009382_020 Hb_001141_080--Hb_009382_020 Hb_004310_060 Hb_004310_060 Hb_001141_080--Hb_004310_060 Hb_008725_250 Hb_008725_250 Hb_001141_080--Hb_008725_250 Hb_001141_080--Hb_003428_110 Hb_000206_220 Hb_000206_220 Hb_055259_010--Hb_000206_220 Hb_002805_290 Hb_002805_290 Hb_055259_010--Hb_002805_290 Hb_003106_140 Hb_003106_140 Hb_055259_010--Hb_003106_140 Hb_001999_120 Hb_001999_120 Hb_055259_010--Hb_001999_120 Hb_003751_120 Hb_003751_120 Hb_055259_010--Hb_003751_120 Hb_005618_040 Hb_005618_040 Hb_055259_010--Hb_005618_040 Hb_011537_040 Hb_011537_040 Hb_001946_260--Hb_011537_040 Hb_025557_020 Hb_025557_020 Hb_001946_260--Hb_025557_020 Hb_164010_020 Hb_164010_020 Hb_001946_260--Hb_164010_020 Hb_000282_150 Hb_000282_150 Hb_001946_260--Hb_000282_150 Hb_000879_140 Hb_000879_140 Hb_001946_260--Hb_000879_140 Hb_000002_330 Hb_000002_330 Hb_001946_260--Hb_000002_330 Hb_000877_060 Hb_000877_060 Hb_012052_060--Hb_000877_060 Hb_004920_040 Hb_004920_040 Hb_012052_060--Hb_004920_040 Hb_003106_070 Hb_003106_070 Hb_012052_060--Hb_003106_070 Hb_004221_010 Hb_004221_010 Hb_012052_060--Hb_004221_010 Hb_006189_010 Hb_006189_010 Hb_012052_060--Hb_006189_010 Hb_084934_010 Hb_084934_010 Hb_012052_060--Hb_084934_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.287 2.00391 0.249305 2.41003 11.613 10.9994
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.0707 6.83719 6.62028 15.8212 0.301902

CAGE analysis