Hb_004718_060

Information

Type -
Description -
Location Contig4718: 137052-144653
Sequence    

Annotation

kegg
ID tcc:TCM_038282
description CHY-type/CTCHY-type/RING-type Zinc finger protein isoform 1
nr
ID XP_012077474.1
description PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 isoform X1 [Jatropha curcas]
swissprot
ID Q9CR50
description RING finger and CHY zinc finger domain-containing protein 1 OS=Mus musculus GN=Rchy1 PE=1 SV=1
trembl
ID A0A067KGZ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07809 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44306: 137813-138259 , PASA_asmbl_44309: 142045-142687 , PASA_asmbl_44310: 143175-143336
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004718_060 0.0 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 isoform X1 [Jatropha curcas]
2 Hb_009178_010 0.0593552095 - - PREDICTED: uncharacterized protein LOC105637474 [Jatropha curcas]
3 Hb_000956_040 0.0754143516 - - PREDICTED: probable E3 ubiquitin-protein ligase HIP1 [Jatropha curcas]
4 Hb_005873_020 0.0771706128 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]
5 Hb_000172_360 0.0821705586 - - PREDICTED: apoptotic chromatin condensation inducer in the nucleus [Jatropha curcas]
6 Hb_005305_100 0.0896803235 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
7 Hb_000260_760 0.0898394992 - - PREDICTED: protein EXPORTIN 1A [Jatropha curcas]
8 Hb_003058_140 0.0938316055 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002686_410 0.0949129662 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 48 kDa protein-like isoform X2 [Jatropha curcas]
10 Hb_003925_060 0.0955382844 - - PREDICTED: uncharacterized protein LOC105645218 isoform X1 [Jatropha curcas]
11 Hb_000300_560 0.0976697446 - - PREDICTED: probable glycosyltransferase At5g03795 isoform X1 [Jatropha curcas]
12 Hb_000034_110 0.0984681906 - - sentrin/sumo-specific protease, putative [Ricinus communis]
13 Hb_000640_190 0.0994899777 - - PREDICTED: proline-rich receptor-like protein kinase PERK3 isoform X1 [Jatropha curcas]
14 Hb_001009_120 0.1016265192 - - PREDICTED: transcription factor GTE10 isoform X2 [Jatropha curcas]
15 Hb_000046_600 0.1022161767 - - PREDICTED: cullin-1-like [Jatropha curcas]
16 Hb_000796_120 0.1028278691 - - PREDICTED: SWR1-complex protein 4 isoform X3 [Jatropha curcas]
17 Hb_003540_250 0.1031383538 - - PREDICTED: uncharacterized protein LOC105649465 isoform X2 [Jatropha curcas]
18 Hb_000470_110 0.1033787486 - - PREDICTED: probable LIM domain-containing serine/threonine-protein kinase DDB_G0287001 [Jatropha curcas]
19 Hb_001247_210 0.1040132507 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000030_140 0.1043025043 - - PREDICTED: general negative regulator of transcription subunit 3 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004718_060 Hb_004718_060 Hb_009178_010 Hb_009178_010 Hb_004718_060--Hb_009178_010 Hb_000956_040 Hb_000956_040 Hb_004718_060--Hb_000956_040 Hb_005873_020 Hb_005873_020 Hb_004718_060--Hb_005873_020 Hb_000172_360 Hb_000172_360 Hb_004718_060--Hb_000172_360 Hb_005305_100 Hb_005305_100 Hb_004718_060--Hb_005305_100 Hb_000260_760 Hb_000260_760 Hb_004718_060--Hb_000260_760 Hb_009178_010--Hb_000260_760 Hb_002686_410 Hb_002686_410 Hb_009178_010--Hb_002686_410 Hb_000034_110 Hb_000034_110 Hb_009178_010--Hb_000034_110 Hb_000030_140 Hb_000030_140 Hb_009178_010--Hb_000030_140 Hb_009178_010--Hb_000956_040 Hb_000956_040--Hb_005305_100 Hb_000956_040--Hb_000034_110 Hb_033152_090 Hb_033152_090 Hb_000956_040--Hb_033152_090 Hb_001009_120 Hb_001009_120 Hb_000956_040--Hb_001009_120 Hb_010287_020 Hb_010287_020 Hb_000956_040--Hb_010287_020 Hb_004774_090 Hb_004774_090 Hb_000956_040--Hb_004774_090 Hb_054865_020 Hb_054865_020 Hb_005873_020--Hb_054865_020 Hb_005873_020--Hb_009178_010 Hb_008387_010 Hb_008387_010 Hb_005873_020--Hb_008387_010 Hb_003925_060 Hb_003925_060 Hb_005873_020--Hb_003925_060 Hb_000878_160 Hb_000878_160 Hb_005873_020--Hb_000878_160 Hb_003058_140 Hb_003058_140 Hb_000172_360--Hb_003058_140 Hb_000172_360--Hb_005305_100 Hb_000172_360--Hb_000260_760 Hb_008165_020 Hb_008165_020 Hb_000172_360--Hb_008165_020 Hb_009158_060 Hb_009158_060 Hb_000172_360--Hb_009158_060 Hb_001159_060 Hb_001159_060 Hb_000172_360--Hb_001159_060 Hb_000300_030 Hb_000300_030 Hb_005305_100--Hb_000300_030 Hb_005305_100--Hb_008165_020 Hb_000179_190 Hb_000179_190 Hb_005305_100--Hb_000179_190 Hb_000110_350 Hb_000110_350 Hb_005305_100--Hb_000110_350 Hb_000260_760--Hb_000030_140 Hb_002461_020 Hb_002461_020 Hb_000260_760--Hb_002461_020 Hb_000428_030 Hb_000428_030 Hb_000260_760--Hb_000428_030 Hb_000996_020 Hb_000996_020 Hb_000260_760--Hb_000996_020 Hb_170077_010 Hb_170077_010 Hb_000260_760--Hb_170077_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.355605 1.11215 1.53847 0.821589 0.361995 0.610985
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.307752 0.269007 0.201526 0.68799 0.84126

CAGE analysis