Hb_004722_050

Information

Type -
Description -
Location Contig4722: 52470-53774
Sequence    

Annotation

kegg
ID pop:POPTR_0011s02010g
description hypothetical protein
nr
ID XP_006377214.1
description hypothetical protein POPTR_0011s02010g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5FYK7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s02010g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004722_050 0.0 - - hypothetical protein POPTR_0011s02010g [Populus trichocarpa]
2 Hb_001926_050 0.009940303 - - PREDICTED: peroxidase 19 [Jatropha curcas]
3 Hb_000514_010 0.0107965781 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA4 [Jatropha curcas]
4 Hb_001171_020 0.016206442 - - PREDICTED: gibberellin 3-beta-dioxygenase 3-like [Citrus sinensis]
5 Hb_004117_070 0.0179660435 - - PREDICTED: GDSL esterase/lipase At1g71691 [Jatropha curcas]
6 Hb_001372_010 0.0192387294 - - ankyrin repeat-containing protein, putative [Ricinus communis]
7 Hb_004598_010 0.0195664221 - - PREDICTED: 11-beta-hydroxysteroid dehydrogenase-like 5 [Jatropha curcas]
8 Hb_182291_010 0.0207895136 - - hypothetical protein CICLE_v10029654mg [Citrus clementina]
9 Hb_002049_040 0.0218612257 - - PREDICTED: protein UNUSUAL FLORAL ORGANS [Jatropha curcas]
10 Hb_006953_010 0.0239425258 - - cytochrome P450, putative [Ricinus communis]
11 Hb_107495_020 0.026745639 - - PREDICTED: GDSL esterase/lipase At1g71691 [Jatropha curcas]
12 Hb_001536_070 0.0274881289 - - hypothetical protein JCGZ_20053 [Jatropha curcas]
13 Hb_000265_040 0.0276033238 - - PREDICTED: subtilisin-like protease, partial [Prunus mume]
14 Hb_030385_030 0.0302262257 - - PREDICTED: B3 domain-containing protein At3g19184 isoform X1 [Jatropha curcas]
15 Hb_075653_010 0.0316117453 - - PREDICTED: tyrosine decarboxylase 1-like [Jatropha curcas]
16 Hb_002305_040 0.0325851759 - - TMV resistance protein N, putative [Ricinus communis]
17 Hb_011179_010 0.0336456631 transcription factor TF Family: ERF hypothetical protein JCGZ_14625 [Jatropha curcas]
18 Hb_004228_050 0.0381806201 - - PREDICTED: tubulin beta chain-like [Jatropha curcas]
19 Hb_000592_150 0.0391131501 - - Os05g0413200 [Oryza sativa Japonica Group]
20 Hb_000173_040 0.0396690552 - - putative xylanase inhibitor, partial [Triticum aestivum]

Gene co-expression network

sample Hb_004722_050 Hb_004722_050 Hb_001926_050 Hb_001926_050 Hb_004722_050--Hb_001926_050 Hb_000514_010 Hb_000514_010 Hb_004722_050--Hb_000514_010 Hb_001171_020 Hb_001171_020 Hb_004722_050--Hb_001171_020 Hb_004117_070 Hb_004117_070 Hb_004722_050--Hb_004117_070 Hb_001372_010 Hb_001372_010 Hb_004722_050--Hb_001372_010 Hb_004598_010 Hb_004598_010 Hb_004722_050--Hb_004598_010 Hb_001926_050--Hb_004117_070 Hb_030385_030 Hb_030385_030 Hb_001926_050--Hb_030385_030 Hb_001926_050--Hb_000514_010 Hb_011179_010 Hb_011179_010 Hb_001926_050--Hb_011179_010 Hb_001926_050--Hb_001171_020 Hb_000514_010--Hb_001171_020 Hb_000514_010--Hb_001372_010 Hb_000514_010--Hb_004598_010 Hb_182291_010 Hb_182291_010 Hb_000514_010--Hb_182291_010 Hb_002049_040 Hb_002049_040 Hb_000514_010--Hb_002049_040 Hb_001171_020--Hb_001372_010 Hb_001171_020--Hb_004598_010 Hb_001171_020--Hb_182291_010 Hb_001171_020--Hb_002049_040 Hb_006953_010 Hb_006953_010 Hb_001171_020--Hb_006953_010 Hb_004117_070--Hb_030385_030 Hb_004117_070--Hb_011179_010 Hb_000173_040 Hb_000173_040 Hb_004117_070--Hb_000173_040 Hb_154114_040 Hb_154114_040 Hb_004117_070--Hb_154114_040 Hb_001372_010--Hb_004598_010 Hb_001372_010--Hb_182291_010 Hb_001372_010--Hb_002049_040 Hb_001372_010--Hb_006953_010 Hb_107495_020 Hb_107495_020 Hb_001372_010--Hb_107495_020 Hb_004598_010--Hb_182291_010 Hb_004598_010--Hb_002049_040 Hb_004598_010--Hb_006953_010 Hb_004598_010--Hb_107495_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.13036 0.0228347 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis