Hb_004724_040

Information

Type -
Description -
Location Contig4724: 37210-43332
Sequence    

Annotation

kegg
ID rcu:RCOM_1280770
description catalytic, putative
nr
ID XP_012079773.1
description PREDICTED: uncharacterized protein LOC105640153 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9SCS4
description Catalytic, putative OS=Ricinus communis GN=RCOM_1280770 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44318: 41017-43291 , PASA_asmbl_44319: 41017-43291
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004724_040 0.0 - - PREDICTED: uncharacterized protein LOC105640153 isoform X1 [Jatropha curcas]
2 Hb_007766_010 0.0904557394 - - hypothetical protein JCGZ_06718 [Jatropha curcas]
3 Hb_008408_030 0.0980435128 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 2 [Jatropha curcas]
4 Hb_005455_070 0.1054479997 - - hypothetical protein POPTR_0001s04440g [Populus trichocarpa]
5 Hb_000258_430 0.1111864161 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
6 Hb_002326_030 0.114506375 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein REM16-like isoform X1 [Jatropha curcas]
7 Hb_001366_230 0.1171148459 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000427_110 0.1171231962 - - PREDICTED: DNA repair protein XRCC2 homolog isoform X2 [Jatropha curcas]
9 Hb_010174_120 0.121695328 - - PREDICTED: very-long-chain 3-oxoacyl-CoA reductase 1-like [Gossypium raimondii]
10 Hb_116349_150 0.1223883373 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]
11 Hb_001315_020 0.1231471167 - - ring finger protein, putative [Ricinus communis]
12 Hb_000173_170 0.1239406604 - - PREDICTED: UPF0613 protein PB24D3.06c [Jatropha curcas]
13 Hb_000856_340 0.1244091389 - - PREDICTED: uncharacterized protein LOC105640501 [Jatropha curcas]
14 Hb_001191_100 0.1262476234 - - F-actin capping protein beta subunit [Populus trichocarpa]
15 Hb_000389_060 0.127719243 - - PREDICTED: synaptotagmin-3 isoform X1 [Jatropha curcas]
16 Hb_000313_380 0.1280117056 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001017_090 0.1285718364 - - -
18 Hb_001478_050 0.1303387319 - - PREDICTED: uncharacterized protein LOC105640307 [Jatropha curcas]
19 Hb_006787_040 0.1307700639 - - polyadenylate-binding protein, putative [Ricinus communis]
20 Hb_026988_020 0.1311136306 - - outward rectifying K+ channel [Hevea brasiliensis]

Gene co-expression network

sample Hb_004724_040 Hb_004724_040 Hb_007766_010 Hb_007766_010 Hb_004724_040--Hb_007766_010 Hb_008408_030 Hb_008408_030 Hb_004724_040--Hb_008408_030 Hb_005455_070 Hb_005455_070 Hb_004724_040--Hb_005455_070 Hb_000258_430 Hb_000258_430 Hb_004724_040--Hb_000258_430 Hb_002326_030 Hb_002326_030 Hb_004724_040--Hb_002326_030 Hb_001366_230 Hb_001366_230 Hb_004724_040--Hb_001366_230 Hb_006070_010 Hb_006070_010 Hb_007766_010--Hb_006070_010 Hb_000481_020 Hb_000481_020 Hb_007766_010--Hb_000481_020 Hb_010483_020 Hb_010483_020 Hb_007766_010--Hb_010483_020 Hb_007766_010--Hb_000258_430 Hb_001696_030 Hb_001696_030 Hb_007766_010--Hb_001696_030 Hb_008847_010 Hb_008847_010 Hb_008408_030--Hb_008847_010 Hb_006787_040 Hb_006787_040 Hb_008408_030--Hb_006787_040 Hb_001437_040 Hb_001437_040 Hb_008408_030--Hb_001437_040 Hb_000787_070 Hb_000787_070 Hb_008408_030--Hb_000787_070 Hb_115919_020 Hb_115919_020 Hb_008408_030--Hb_115919_020 Hb_005455_070--Hb_002326_030 Hb_001141_470 Hb_001141_470 Hb_005455_070--Hb_001141_470 Hb_001478_050 Hb_001478_050 Hb_005455_070--Hb_001478_050 Hb_008695_190 Hb_008695_190 Hb_005455_070--Hb_008695_190 Hb_001473_130 Hb_001473_130 Hb_005455_070--Hb_001473_130 Hb_001981_090 Hb_001981_090 Hb_005455_070--Hb_001981_090 Hb_002450_050 Hb_002450_050 Hb_000258_430--Hb_002450_050 Hb_006551_010 Hb_006551_010 Hb_000258_430--Hb_006551_010 Hb_001017_090 Hb_001017_090 Hb_000258_430--Hb_001017_090 Hb_000028_470 Hb_000028_470 Hb_000258_430--Hb_000028_470 Hb_010174_130 Hb_010174_130 Hb_000258_430--Hb_010174_130 Hb_003404_030 Hb_003404_030 Hb_000258_430--Hb_003404_030 Hb_000861_040 Hb_000861_040 Hb_002326_030--Hb_000861_040 Hb_012522_030 Hb_012522_030 Hb_002326_030--Hb_012522_030 Hb_000173_170 Hb_000173_170 Hb_002326_030--Hb_000173_170 Hb_002326_030--Hb_001473_130 Hb_007229_060 Hb_007229_060 Hb_002326_030--Hb_007229_060 Hb_001191_100 Hb_001191_100 Hb_001366_230--Hb_001191_100 Hb_025087_010 Hb_025087_010 Hb_001366_230--Hb_025087_010 Hb_183963_020 Hb_183963_020 Hb_001366_230--Hb_183963_020 Hb_000313_380 Hb_000313_380 Hb_001366_230--Hb_000313_380 Hb_001804_040 Hb_001804_040 Hb_001366_230--Hb_001804_040 Hb_026988_020 Hb_026988_020 Hb_001366_230--Hb_026988_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
68.9542 2.41353 2.30333 16.2263 34.659 52.5368
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
53.1298 57.7375 55.1713 8.08097 1.31733

CAGE analysis