Hb_004724_070

Information

Type transcription factor
Description TF Family: bZIP
Location Contig4724: 62569-69234
Sequence    

Annotation

kegg
ID tcc:TCM_041421
description BZIP transcription factor family protein isoform 1
nr
ID XP_012077857.1
description PREDICTED: transcription factor TGA2 isoform X1 [Jatropha curcas]
swissprot
ID O24160
description TGACG-sequence-specific DNA-binding protein TGA-2.1 OS=Nicotiana tabacum GN=TGA21 PE=1 SV=1
trembl
ID A0A067KMV4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13576 PE=4 SV=1
Gene Ontology
ID GO:0003700
description transcription factor tga2 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44323: 64226-65084 , PASA_asmbl_44324: 67387-69004
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004724_070 0.0 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA2 isoform X1 [Jatropha curcas]
2 Hb_004837_170 0.1199683219 - - PREDICTED: uncharacterized protein LOC105648284 [Jatropha curcas]
3 Hb_002282_030 0.1222036306 - - -
4 Hb_028207_030 0.1226838519 - - PREDICTED: non-specific lipid-transfer protein 8-like [Citrus sinensis]
5 Hb_000891_060 0.12308284 - - hypothetical protein JCGZ_11234 [Jatropha curcas]
6 Hb_000616_060 0.1238719347 - - -
7 Hb_000575_010 0.1247342293 - - PREDICTED: uncharacterized protein LOC103454030 [Malus domestica]
8 Hb_005380_040 0.1252865559 - - hypothetical protein PRUPE_ppa015877mg, partial [Prunus persica]
9 Hb_004341_010 0.1331949033 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
10 Hb_001157_130 0.1384657648 - - PREDICTED: transmembrane protein 45B-like [Jatropha curcas]
11 Hb_007850_040 0.1387904964 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000155_270 0.1395382501 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF098 [Jatropha curcas]
13 Hb_027445_080 0.1405643755 transcription factor TF Family: LOB LOB domain protein 25 [Populus trichocarpa]
14 Hb_031862_090 0.1421993855 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
15 Hb_009543_040 0.1422613579 - - -
16 Hb_008001_020 0.1431027993 transcription factor TF Family: GRAS PREDICTED: protein SHORT-ROOT-like [Populus euphratica]
17 Hb_031954_010 0.1449577613 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_002762_070 0.1486122093 transcription factor TF Family: HB homeobox protein knotted-1, putative [Ricinus communis]
19 Hb_060272_010 0.1521439221 - - PREDICTED: gibberellin 20 oxidase 2 [Populus euphratica]
20 Hb_005203_010 0.1544608666 - - PREDICTED: probable nucleolar protein 5-1 [Jatropha curcas]

Gene co-expression network

sample Hb_004724_070 Hb_004724_070 Hb_004837_170 Hb_004837_170 Hb_004724_070--Hb_004837_170 Hb_002282_030 Hb_002282_030 Hb_004724_070--Hb_002282_030 Hb_028207_030 Hb_028207_030 Hb_004724_070--Hb_028207_030 Hb_000891_060 Hb_000891_060 Hb_004724_070--Hb_000891_060 Hb_000616_060 Hb_000616_060 Hb_004724_070--Hb_000616_060 Hb_000575_010 Hb_000575_010 Hb_004724_070--Hb_000575_010 Hb_027445_080 Hb_027445_080 Hb_004837_170--Hb_027445_080 Hb_004341_010 Hb_004341_010 Hb_004837_170--Hb_004341_010 Hb_002762_070 Hb_002762_070 Hb_004837_170--Hb_002762_070 Hb_031954_010 Hb_031954_010 Hb_004837_170--Hb_031954_010 Hb_004837_170--Hb_002282_030 Hb_002282_030--Hb_000891_060 Hb_002282_030--Hb_000616_060 Hb_002282_030--Hb_000575_010 Hb_009543_040 Hb_009543_040 Hb_002282_030--Hb_009543_040 Hb_001157_130 Hb_001157_130 Hb_002282_030--Hb_001157_130 Hb_031862_090 Hb_031862_090 Hb_002282_030--Hb_031862_090 Hb_000077_460 Hb_000077_460 Hb_028207_030--Hb_000077_460 Hb_028207_030--Hb_002762_070 Hb_028207_030--Hb_031954_010 Hb_028207_030--Hb_004341_010 Hb_028207_030--Hb_031862_090 Hb_028207_030--Hb_027445_080 Hb_000891_060--Hb_000616_060 Hb_000891_060--Hb_000575_010 Hb_000891_060--Hb_009543_040 Hb_000891_060--Hb_001157_130 Hb_132438_010 Hb_132438_010 Hb_000891_060--Hb_132438_010 Hb_000616_060--Hb_000575_010 Hb_000616_060--Hb_009543_040 Hb_000616_060--Hb_001157_130 Hb_000616_060--Hb_132438_010 Hb_000575_010--Hb_009543_040 Hb_000575_010--Hb_001157_130 Hb_000575_010--Hb_132438_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00843345 3.33951 0.00625117 3.13503 0 0.173215
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 3.34055 0.0959141

CAGE analysis