Hb_004724_150

Information

Type -
Description -
Location Contig4724: 127210-134996
Sequence    

Annotation

kegg
ID rcu:RCOM_1281710
description expressed protein, putative
nr
ID XP_002523817.1
description expressed protein, putative [Ricinus communis]
swissprot
ID Q6C2T4
description Protein transport protein SEC24 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SEC24 PE=3 SV=1
trembl
ID B9SCU8
description Expressed protein, putative OS=Ricinus communis GN=RCOM_1281710 PE=4 SV=1
Gene Ontology
ID GO:0030127
description protein transport protein sec24-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44344: 127108-134686
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004724_150 0.0 - - expressed protein, putative [Ricinus communis]
2 Hb_000297_010 0.0489326627 - - PREDICTED: uncharacterized protein LOC105637916 isoform X2 [Jatropha curcas]
3 Hb_001341_170 0.0538890425 - - PREDICTED: general transcription factor IIH subunit 2 [Jatropha curcas]
4 Hb_000245_040 0.0586311076 - - PREDICTED: uncharacterized protein LOC105631550 isoform X2 [Jatropha curcas]
5 Hb_000028_180 0.0646561635 - - PREDICTED: probable serine/threonine protein kinase IREH1 isoform X2 [Jatropha curcas]
6 Hb_000556_160 0.0647358859 - - PREDICTED: ankyrin repeat and zinc finger domain-containing protein 1 [Jatropha curcas]
7 Hb_000107_490 0.0687609899 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
8 Hb_015934_040 0.0704326839 - - PREDICTED: protein Hook homolog 3-like [Jatropha curcas]
9 Hb_000041_110 0.0704966002 - - PREDICTED: WW domain-binding protein 11 isoform X1 [Jatropha curcas]
10 Hb_000185_030 0.074093031 - - PREDICTED: arginine-glutamic acid dipeptide repeats protein-like isoform X2 [Jatropha curcas]
11 Hb_000111_290 0.0745365856 - - PREDICTED: E3 ubiquitin-protein ligase KEG [Jatropha curcas]
12 Hb_000866_170 0.0745679459 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_000083_120 0.0750373908 - - transcription factor, putative [Ricinus communis]
14 Hb_000494_070 0.0758291288 - - PREDICTED: protein ARABIDILLO 1-like [Jatropha curcas]
15 Hb_000041_100 0.0764250365 - - PREDICTED: zinc finger CCCH domain-containing protein 41 [Jatropha curcas]
16 Hb_002686_030 0.0764970578 - - PREDICTED: uncharacterized protein LOC105632635 isoform X1 [Jatropha curcas]
17 Hb_011485_070 0.0767408982 - - Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
18 Hb_002518_260 0.0767591323 - - PREDICTED: zinc finger CCCH domain-containing protein 40-like [Jatropha curcas]
19 Hb_000792_010 0.0774092617 - - PREDICTED: mRNA-capping enzyme [Jatropha curcas]
20 Hb_000028_480 0.0782198477 - - PREDICTED: putative 3,4-dihydroxy-2-butanone kinase [Jatropha curcas]

Gene co-expression network

sample Hb_004724_150 Hb_004724_150 Hb_000297_010 Hb_000297_010 Hb_004724_150--Hb_000297_010 Hb_001341_170 Hb_001341_170 Hb_004724_150--Hb_001341_170 Hb_000245_040 Hb_000245_040 Hb_004724_150--Hb_000245_040 Hb_000028_180 Hb_000028_180 Hb_004724_150--Hb_000028_180 Hb_000556_160 Hb_000556_160 Hb_004724_150--Hb_000556_160 Hb_000107_490 Hb_000107_490 Hb_004724_150--Hb_000107_490 Hb_000185_030 Hb_000185_030 Hb_000297_010--Hb_000185_030 Hb_015934_040 Hb_015934_040 Hb_000297_010--Hb_015934_040 Hb_000297_010--Hb_000245_040 Hb_000041_100 Hb_000041_100 Hb_000297_010--Hb_000041_100 Hb_000840_250 Hb_000840_250 Hb_000297_010--Hb_000840_250 Hb_000225_040 Hb_000225_040 Hb_001341_170--Hb_000225_040 Hb_000890_210 Hb_000890_210 Hb_001341_170--Hb_000890_210 Hb_001341_170--Hb_000556_160 Hb_011485_070 Hb_011485_070 Hb_001341_170--Hb_011485_070 Hb_010618_010 Hb_010618_010 Hb_001341_170--Hb_010618_010 Hb_000245_040--Hb_000107_490 Hb_000866_170 Hb_000866_170 Hb_000245_040--Hb_000866_170 Hb_006938_080 Hb_006938_080 Hb_000245_040--Hb_006938_080 Hb_000245_040--Hb_000890_210 Hb_001252_120 Hb_001252_120 Hb_000028_180--Hb_001252_120 Hb_004324_130 Hb_004324_130 Hb_000028_180--Hb_004324_130 Hb_007479_040 Hb_007479_040 Hb_000028_180--Hb_007479_040 Hb_022115_020 Hb_022115_020 Hb_000028_180--Hb_022115_020 Hb_002481_080 Hb_002481_080 Hb_000028_180--Hb_002481_080 Hb_002686_030 Hb_002686_030 Hb_000556_160--Hb_002686_030 Hb_002499_040 Hb_002499_040 Hb_000556_160--Hb_002499_040 Hb_003294_070 Hb_003294_070 Hb_000556_160--Hb_003294_070 Hb_000556_160--Hb_000185_030 Hb_000107_490--Hb_000890_210 Hb_000111_290 Hb_000111_290 Hb_000107_490--Hb_000111_290 Hb_010174_110 Hb_010174_110 Hb_000107_490--Hb_010174_110 Hb_003370_030 Hb_003370_030 Hb_000107_490--Hb_003370_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.67962 11.238 6.71226 7.49031 8.29244 11.8308
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.91492 10.0721 15.7433 13.2732 8.46719

CAGE analysis