Hb_004724_160

Information

Type -
Description -
Location Contig4724: 136233-138410
Sequence    

Annotation

kegg
ID rcu:RCOM_1281730
description 40S ribosomal protein S25, putative
nr
ID XP_012090801.1
description PREDICTED: 40S ribosomal protein S25 [Jatropha curcas]
swissprot
ID Q9T029
description 40S ribosomal protein S25-4 OS=Arabidopsis thaliana GN=RPS25E PE=2 SV=1
trembl
ID A0A067JDX0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03002 PE=4 SV=1
Gene Ontology
ID GO:0005840
description 40s ribosomal protein s25

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44345: 136263-138294
cDNA
(Sanger)
(ID:Location)		 002_N21.ab1: 136300-138294

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004724_160 0.0 - - PREDICTED: 40S ribosomal protein S25 [Jatropha curcas]
2 Hb_011311_010 0.070053621 - - 60S ribosomal protein L27C [Hevea brasiliensis]
3 Hb_001248_080 0.0725636303 - - PREDICTED: 40S ribosomal protein S29 [Nelumbo nucifera]
4 Hb_001269_270 0.0744248691 - - 60S ribosomal protein L27B [Hevea brasiliensis]
5 Hb_001268_140 0.0802217937 - - conserved hypothetical protein [Ricinus communis]
6 Hb_148930_010 0.0828841634 - - PREDICTED: uncharacterized protein LOC105648400 [Jatropha curcas]
7 Hb_001045_080 0.0880783377 - - PREDICTED: uncharacterized protein LOC105646704 [Jatropha curcas]
8 Hb_155764_020 0.0896983041 - - hypothetical protein B456_009G265500 [Gossypium raimondii]
9 Hb_001863_090 0.0899440085 - - hypothetical protein POPTR_0006s07000g [Populus trichocarpa]
10 Hb_000025_600 0.090072772 - - PREDICTED: 30S ribosomal protein S17, chloroplastic-like [Jatropha curcas]
11 Hb_000815_260 0.0915191787 - - 50S ribosomal protein L32pA [Hevea brasiliensis]
12 Hb_001300_270 0.0930218372 - - PREDICTED: U1 small nuclear ribonucleoprotein C-like [Jatropha curcas]
13 Hb_007944_040 0.0935687097 - - 60S ribosomal protein L18aB [Hevea brasiliensis]
14 Hb_001214_160 0.0938467056 - - 60S ribosomal protein L27B [Hevea brasiliensis]
15 Hb_002835_320 0.094655928 - - 60S ribosomal protein L27B [Hevea brasiliensis]
16 Hb_003226_210 0.0946593942 - - hypothetical protein PRUPE_ppa013414mg [Prunus persica]
17 Hb_026398_010 0.0947325309 - - hypothetical protein B456_010G132100 [Gossypium raimondii]
18 Hb_004109_020 0.0948225526 - - 60S ribosomal protein L18aA [Hevea brasiliensis]
19 Hb_002925_030 0.0955998021 - - 40S ribosomal protein S16B [Hevea brasiliensis]
20 Hb_001433_050 0.0957093483 - - 60S ribosomal protein L18, putative [Ricinus communis]

Gene co-expression network

sample Hb_004724_160 Hb_004724_160 Hb_011311_010 Hb_011311_010 Hb_004724_160--Hb_011311_010 Hb_001248_080 Hb_001248_080 Hb_004724_160--Hb_001248_080 Hb_001269_270 Hb_001269_270 Hb_004724_160--Hb_001269_270 Hb_001268_140 Hb_001268_140 Hb_004724_160--Hb_001268_140 Hb_148930_010 Hb_148930_010 Hb_004724_160--Hb_148930_010 Hb_001045_080 Hb_001045_080 Hb_004724_160--Hb_001045_080 Hb_002660_030 Hb_002660_030 Hb_011311_010--Hb_002660_030 Hb_002588_010 Hb_002588_010 Hb_011311_010--Hb_002588_010 Hb_026398_010 Hb_026398_010 Hb_011311_010--Hb_026398_010 Hb_007944_040 Hb_007944_040 Hb_011311_010--Hb_007944_040 Hb_002925_030 Hb_002925_030 Hb_011311_010--Hb_002925_030 Hb_155764_020 Hb_155764_020 Hb_001248_080--Hb_155764_020 Hb_003398_120 Hb_003398_120 Hb_001248_080--Hb_003398_120 Hb_001248_080--Hb_148930_010 Hb_001998_050 Hb_001998_050 Hb_001248_080--Hb_001998_050 Hb_000563_240 Hb_000563_240 Hb_001248_080--Hb_000563_240 Hb_003125_150 Hb_003125_150 Hb_001269_270--Hb_003125_150 Hb_001638_260 Hb_001638_260 Hb_001269_270--Hb_001638_260 Hb_000617_090 Hb_000617_090 Hb_001269_270--Hb_000617_090 Hb_001269_270--Hb_001045_080 Hb_000526_150 Hb_000526_150 Hb_001269_270--Hb_000526_150 Hb_009851_100 Hb_009851_100 Hb_001269_270--Hb_009851_100 Hb_001300_270 Hb_001300_270 Hb_001268_140--Hb_001300_270 Hb_000134_330 Hb_000134_330 Hb_001268_140--Hb_000134_330 Hb_001268_140--Hb_007944_040 Hb_001268_140--Hb_001045_080 Hb_001268_140--Hb_155764_020 Hb_001268_140--Hb_001269_270 Hb_002835_320 Hb_002835_320 Hb_148930_010--Hb_002835_320 Hb_001433_050 Hb_001433_050 Hb_148930_010--Hb_001433_050 Hb_003376_130 Hb_003376_130 Hb_148930_010--Hb_003376_130 Hb_148200_010 Hb_148200_010 Hb_148930_010--Hb_148200_010 Hb_148930_010--Hb_003398_120 Hb_001045_080--Hb_003125_150 Hb_001045_080--Hb_009851_100 Hb_000312_090 Hb_000312_090 Hb_001045_080--Hb_000312_090 Hb_000046_260 Hb_000046_260 Hb_001045_080--Hb_000046_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
150.717 81.5705 102.51 91.842 139.107 214.534
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
411.979 633.079 234.538 141.441 22.923

CAGE analysis