Hb_004724_170

Information

Type -
Description -
Location Contig4724: 142725-148179
Sequence    

Annotation

kegg
ID rcu:RCOM_1281750
description gtpase activating protein, putative
nr
ID XP_012076117.1
description PREDICTED: rho GTPase-activating protein 1 [Jatropha curcas]
swissprot
ID Q9FMR1
description Rho GTPase-activating protein 1 OS=Arabidopsis thaliana GN=ROPGAP1 PE=2 SV=1
trembl
ID A0A067KRF1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12690 PE=4 SV=1
Gene Ontology
ID GO:0007165
description rho gtpase-activating protein 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44346: 142787-148234 , PASA_asmbl_44347: 142787-148234
cDNA
(Sanger)
(ID:Location)		 044_D10.ab1: 142787-144900

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004724_170 0.0 - - PREDICTED: rho GTPase-activating protein 1 [Jatropha curcas]
2 Hb_000979_260 0.1371531617 - - ARF GTPase activator, putative [Ricinus communis]
3 Hb_004041_050 0.141822953 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
4 Hb_097335_010 0.1419570179 - - abhydrolase domain containing, putative [Ricinus communis]
5 Hb_011242_010 0.1455074834 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-2 [Jatropha curcas]
6 Hb_001180_010 0.1487544847 - - PREDICTED: glucan endo-1,3-beta-glucosidase 9 [Jatropha curcas]
7 Hb_001433_150 0.1497580949 - - conserved hypothetical protein [Ricinus communis]
8 Hb_042083_030 0.1504225889 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_008725_090 0.1505259117 - - PREDICTED: uncharacterized protein LOC105642581 [Jatropha curcas]
10 Hb_000076_030 0.150823174 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 isoform X1 [Jatropha curcas]
11 Hb_005622_020 0.1610572611 - - PREDICTED: DCC family protein At1g52590, chloroplastic [Jatropha curcas]
12 Hb_002662_110 0.1631713636 - - Kinesin heavy chain, putative [Ricinus communis]
13 Hb_048476_140 0.1655796798 - - PREDICTED: dynamin-related protein 1C [Jatropha curcas]
14 Hb_002759_220 0.1682764814 - - altered response to gravity (arg1), plant, putative [Ricinus communis]
15 Hb_001544_050 0.1697125518 - - PREDICTED: U-box domain-containing protein 11-like [Jatropha curcas]
16 Hb_015934_060 0.1697255492 - - PREDICTED: mitogen-activated protein kinase 20 [Jatropha curcas]
17 Hb_000417_050 0.1702630524 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase MRH1 [Jatropha curcas]
18 Hb_003145_010 0.1720753899 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At1g59780 [Jatropha curcas]
19 Hb_003053_070 0.1729697183 - - PREDICTED: phosphoglucan phosphatase LSF1, chloroplastic [Jatropha curcas]
20 Hb_004994_330 0.1729742329 - - DNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_004724_170 Hb_004724_170 Hb_000979_260 Hb_000979_260 Hb_004724_170--Hb_000979_260 Hb_004041_050 Hb_004041_050 Hb_004724_170--Hb_004041_050 Hb_097335_010 Hb_097335_010 Hb_004724_170--Hb_097335_010 Hb_011242_010 Hb_011242_010 Hb_004724_170--Hb_011242_010 Hb_001180_010 Hb_001180_010 Hb_004724_170--Hb_001180_010 Hb_001433_150 Hb_001433_150 Hb_004724_170--Hb_001433_150 Hb_003226_200 Hb_003226_200 Hb_000979_260--Hb_003226_200 Hb_001754_120 Hb_001754_120 Hb_000979_260--Hb_001754_120 Hb_033152_110 Hb_033152_110 Hb_000979_260--Hb_033152_110 Hb_000979_260--Hb_011242_010 Hb_000622_060 Hb_000622_060 Hb_000979_260--Hb_000622_060 Hb_048476_140 Hb_048476_140 Hb_004041_050--Hb_048476_140 Hb_004041_050--Hb_001180_010 Hb_000076_030 Hb_000076_030 Hb_004041_050--Hb_000076_030 Hb_042083_030 Hb_042083_030 Hb_004041_050--Hb_042083_030 Hb_121089_050 Hb_121089_050 Hb_004041_050--Hb_121089_050 Hb_002759_220 Hb_002759_220 Hb_004041_050--Hb_002759_220 Hb_002724_010 Hb_002724_010 Hb_097335_010--Hb_002724_010 Hb_001538_080 Hb_001538_080 Hb_097335_010--Hb_001538_080 Hb_030827_010 Hb_030827_010 Hb_097335_010--Hb_030827_010 Hb_003145_010 Hb_003145_010 Hb_097335_010--Hb_003145_010 Hb_000977_020 Hb_000977_020 Hb_097335_010--Hb_000977_020 Hb_003835_080 Hb_003835_080 Hb_097335_010--Hb_003835_080 Hb_011242_010--Hb_003145_010 Hb_114917_010 Hb_114917_010 Hb_011242_010--Hb_114917_010 Hb_005183_040 Hb_005183_040 Hb_011242_010--Hb_005183_040 Hb_011242_010--Hb_097335_010 Hb_011242_010--Hb_030827_010 Hb_001544_050 Hb_001544_050 Hb_001180_010--Hb_001544_050 Hb_001180_010--Hb_000076_030 Hb_004994_330 Hb_004994_330 Hb_001180_010--Hb_004994_330 Hb_001180_010--Hb_048476_140 Hb_000465_410 Hb_000465_410 Hb_001180_010--Hb_000465_410 Hb_002701_070 Hb_002701_070 Hb_001180_010--Hb_002701_070 Hb_001433_150--Hb_001180_010 Hb_002028_110 Hb_002028_110 Hb_001433_150--Hb_002028_110 Hb_001153_100 Hb_001153_100 Hb_001433_150--Hb_001153_100 Hb_002641_120 Hb_002641_120 Hb_001433_150--Hb_002641_120 Hb_001433_150--Hb_001544_050 Hb_001433_150--Hb_002759_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.42026 2.6793 11.9055 10.201 0.0265836 0.0776474
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.236574 0.236913 2.95567 2.69863 13.8218

CAGE analysis