Hb_004724_200

Information

Type -
Description -
Location Contig4724: 160020-163023
Sequence    

Annotation

kegg
ID rcu:RCOM_0659080
description retinoblastoma-binding protein, putative (EC:2.3.1.48)
nr
ID XP_012072627.1
description PREDICTED: WD-40 repeat-containing protein MSI1 [Jatropha curcas]
swissprot
ID O22466
description WD-40 repeat-containing protein MSI1 OS=Solanum lycopersicum GN=MSI1 PE=2 SV=1
trembl
ID A0A067KNK5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06693 PE=4 SV=1
Gene Ontology
ID GO:0005515
description wd-40 repeat-containing protein msi1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44353: 160648-163008
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004724_200 0.0 - - PREDICTED: WD-40 repeat-containing protein MSI1 [Jatropha curcas]
2 Hb_002030_030 0.0527122349 - - PREDICTED: GLABRA2 expression modulator [Jatropha curcas]
3 Hb_002811_360 0.0556907907 - - PREDICTED: GDP-mannose 3,5-epimerase 2 [Eucalyptus grandis]
4 Hb_001301_200 0.0565287783 desease resistance Gene Name: NB-ARC Disease resistance protein RPS2, putative [Ricinus communis]
5 Hb_048937_040 0.0579952219 - - APO protein 4, mitochondrial precursor, putative [Ricinus communis]
6 Hb_004109_090 0.0648016156 - - ubiquitin-protein ligase, putative [Ricinus communis]
7 Hb_001199_020 0.0665026581 - - hypothetical protein JCGZ_25565 [Jatropha curcas]
8 Hb_000103_180 0.0677661483 - - PREDICTED: stress-induced-phosphoprotein 1 [Jatropha curcas]
9 Hb_001454_210 0.0694107542 - - PREDICTED: uncharacterized protein LOC105643435 [Jatropha curcas]
10 Hb_006922_100 0.0696252761 - - PREDICTED: uncharacterized protein LOC105645470 isoform X1 [Jatropha curcas]
11 Hb_002876_110 0.0700063792 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000661_050 0.0703057386 - - PREDICTED: ankyrin repeat domain-containing protein 13C-like [Jatropha curcas]
13 Hb_000134_090 0.0709172978 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial [Jatropha curcas]
14 Hb_003195_070 0.0720175022 - - Uncharacterized protein isoform 1 [Theobroma cacao]
15 Hb_000051_070 0.0724808187 - - PREDICTED: uncharacterized protein LOC105650959 [Jatropha curcas]
16 Hb_007218_080 0.0732381924 - - PREDICTED: uncharacterized protein LOC105631523 [Jatropha curcas]
17 Hb_000120_950 0.0739203109 - - PREDICTED: protein GRIP [Jatropha curcas]
18 Hb_001006_140 0.0740320564 transcription factor TF Family: SNF2 PREDICTED: protein CHROMATIN REMODELING 19 isoform X2 [Jatropha curcas]
19 Hb_001680_010 0.0741029726 - - Serine/threonine protein kinase SAPK3 [Medicago truncatula]
20 Hb_002079_010 0.074663345 - - hypothetical protein POPTR_0001s01970g [Populus trichocarpa]

Gene co-expression network

sample Hb_004724_200 Hb_004724_200 Hb_002030_030 Hb_002030_030 Hb_004724_200--Hb_002030_030 Hb_002811_360 Hb_002811_360 Hb_004724_200--Hb_002811_360 Hb_001301_200 Hb_001301_200 Hb_004724_200--Hb_001301_200 Hb_048937_040 Hb_048937_040 Hb_004724_200--Hb_048937_040 Hb_004109_090 Hb_004109_090 Hb_004724_200--Hb_004109_090 Hb_001199_020 Hb_001199_020 Hb_004724_200--Hb_001199_020 Hb_003728_030 Hb_003728_030 Hb_002030_030--Hb_003728_030 Hb_000134_090 Hb_000134_090 Hb_002030_030--Hb_000134_090 Hb_004934_090 Hb_004934_090 Hb_002030_030--Hb_004934_090 Hb_033642_010 Hb_033642_010 Hb_002030_030--Hb_033642_010 Hb_002079_010 Hb_002079_010 Hb_002030_030--Hb_002079_010 Hb_039837_010 Hb_039837_010 Hb_002811_360--Hb_039837_010 Hb_028872_140 Hb_028872_140 Hb_002811_360--Hb_028872_140 Hb_001454_210 Hb_001454_210 Hb_002811_360--Hb_001454_210 Hb_000062_240 Hb_000062_240 Hb_002811_360--Hb_000062_240 Hb_002811_360--Hb_001301_200 Hb_007163_090 Hb_007163_090 Hb_001301_200--Hb_007163_090 Hb_023344_030 Hb_023344_030 Hb_001301_200--Hb_023344_030 Hb_004447_060 Hb_004447_060 Hb_001301_200--Hb_004447_060 Hb_001680_010 Hb_001680_010 Hb_001301_200--Hb_001680_010 Hb_001301_200--Hb_048937_040 Hb_010457_030 Hb_010457_030 Hb_048937_040--Hb_010457_030 Hb_003175_010 Hb_003175_010 Hb_048937_040--Hb_003175_010 Hb_000010_330 Hb_000010_330 Hb_048937_040--Hb_000010_330 Hb_010139_040 Hb_010139_040 Hb_048937_040--Hb_010139_040 Hb_004109_090--Hb_003175_010 Hb_003929_160 Hb_003929_160 Hb_004109_090--Hb_003929_160 Hb_000409_020 Hb_000409_020 Hb_004109_090--Hb_000409_020 Hb_001818_090 Hb_001818_090 Hb_004109_090--Hb_001818_090 Hb_005663_060 Hb_005663_060 Hb_004109_090--Hb_005663_060 Hb_000058_100 Hb_000058_100 Hb_001199_020--Hb_000058_100 Hb_001006_140 Hb_001006_140 Hb_001199_020--Hb_001006_140 Hb_007441_120 Hb_007441_120 Hb_001199_020--Hb_007441_120 Hb_006922_100 Hb_006922_100 Hb_001199_020--Hb_006922_100 Hb_004055_030 Hb_004055_030 Hb_001199_020--Hb_004055_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.6131 13.4196 8.98513 13.767 31.1482 37.1786
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.0356 22.3322 28.5593 16.9743 13.7444

CAGE analysis