Hb_004724_220

Information

Type -
Description -
Location Contig4724: 165179-167678
Sequence    

Annotation

kegg
ID rcu:RCOM_1281800
description ef-hand calcium binding protein, putative
nr
ID XP_012076123.1
description PREDICTED: probable calcium-binding protein CML48 [Jatropha curcas]
swissprot
ID Q9ZQH1
description Probable calcium-binding protein CML48 OS=Arabidopsis thaliana GN=CML48 PE=2 SV=2
trembl
ID A0A067KHD1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12699 PE=4 SV=1
Gene Ontology
ID GO:0005509
description probable calcium-binding protein cml48

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44355: 165751-166166 , PASA_asmbl_44356: 165357-167585 , PASA_asmbl_44357: 165357-167585
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004724_220 0.0 - - PREDICTED: probable calcium-binding protein CML48 [Jatropha curcas]
2 Hb_001377_360 0.108127704 transcription factor TF Family: ARF PREDICTED: auxin response factor 18 [Jatropha curcas]
3 Hb_000291_030 0.1218844536 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1-like [Eucalyptus grandis]
4 Hb_005194_020 0.1298882188 - - PREDICTED: UPF0553 protein-like isoform X1 [Jatropha curcas]
5 Hb_004648_090 0.1343782426 - - peroxisomal biogenesis factor, putative [Ricinus communis]
6 Hb_000979_060 0.1357643217 - - PREDICTED: protein PLANT CADMIUM RESISTANCE 2-like [Gossypium raimondii]
7 Hb_004635_030 0.1370002969 - - PREDICTED: F-box/kelch-repeat protein At1g57790-like [Jatropha curcas]
8 Hb_002228_110 0.1403695705 - - cytochrome b5 isoform Cb5-B [Vernicia fordii]
9 Hb_007403_110 0.1405414481 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 4-like [Jatropha curcas]
10 Hb_003682_030 0.1418045284 - - hypothetical protein CICLE_v10020876mg [Citrus clementina]
11 Hb_006261_090 0.1423288916 - - PREDICTED: exosome complex exonuclease RRP46 homolog [Jatropha curcas]
12 Hb_000187_030 0.1451750315 - - PREDICTED: cyclin-D4-1-like isoform X2 [Jatropha curcas]
13 Hb_000059_340 0.145609685 transcription factor TF Family: SOH1 uncharacterized protein LOC100527879 [Glycine max]
14 Hb_006588_210 0.1478540246 - - PREDICTED: E3 ubiquitin-protein ligase Hakai [Jatropha curcas]
15 Hb_000169_080 0.1481350768 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 3 [Jatropha curcas]
16 Hb_000081_010 0.1498085262 - - hypothetical protein B456_012G056000 [Gossypium raimondii]
17 Hb_001898_240 0.1502344498 - - PREDICTED: uncharacterized protein LOC105779688 [Gossypium raimondii]
18 Hb_009767_070 0.1503086926 - - PREDICTED: uncharacterized protein LOC105631980 [Jatropha curcas]
19 Hb_008695_090 0.1509010213 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Jatropha curcas]
20 Hb_000163_240 0.1526450304 - - PREDICTED: protein OPI10 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_004724_220 Hb_004724_220 Hb_001377_360 Hb_001377_360 Hb_004724_220--Hb_001377_360 Hb_000291_030 Hb_000291_030 Hb_004724_220--Hb_000291_030 Hb_005194_020 Hb_005194_020 Hb_004724_220--Hb_005194_020 Hb_004648_090 Hb_004648_090 Hb_004724_220--Hb_004648_090 Hb_000979_060 Hb_000979_060 Hb_004724_220--Hb_000979_060 Hb_004635_030 Hb_004635_030 Hb_004724_220--Hb_004635_030 Hb_007403_110 Hb_007403_110 Hb_001377_360--Hb_007403_110 Hb_001377_360--Hb_000291_030 Hb_001477_070 Hb_001477_070 Hb_001377_360--Hb_001477_070 Hb_001377_360--Hb_004635_030 Hb_002228_110 Hb_002228_110 Hb_001377_360--Hb_002228_110 Hb_000011_050 Hb_000011_050 Hb_000291_030--Hb_000011_050 Hb_002631_320 Hb_002631_320 Hb_000291_030--Hb_002631_320 Hb_000579_190 Hb_000579_190 Hb_000291_030--Hb_000579_190 Hb_000291_030--Hb_000979_060 Hb_000291_030--Hb_004635_030 Hb_004236_030 Hb_004236_030 Hb_000291_030--Hb_004236_030 Hb_005194_020--Hb_000979_060 Hb_000951_100 Hb_000951_100 Hb_005194_020--Hb_000951_100 Hb_005194_020--Hb_004635_030 Hb_002311_480 Hb_002311_480 Hb_005194_020--Hb_002311_480 Hb_011671_310 Hb_011671_310 Hb_005194_020--Hb_011671_310 Hb_001005_020 Hb_001005_020 Hb_005194_020--Hb_001005_020 Hb_004870_050 Hb_004870_050 Hb_004648_090--Hb_004870_050 Hb_002110_160 Hb_002110_160 Hb_004648_090--Hb_002110_160 Hb_004648_090--Hb_002228_110 Hb_005389_100 Hb_005389_100 Hb_004648_090--Hb_005389_100 Hb_010998_040 Hb_010998_040 Hb_004648_090--Hb_010998_040 Hb_001671_040 Hb_001671_040 Hb_004648_090--Hb_001671_040 Hb_000684_100 Hb_000684_100 Hb_000979_060--Hb_000684_100 Hb_000979_060--Hb_002311_480 Hb_000009_220 Hb_000009_220 Hb_000979_060--Hb_000009_220 Hb_001322_020 Hb_001322_020 Hb_000979_060--Hb_001322_020 Hb_000979_060--Hb_000579_190 Hb_002478_040 Hb_002478_040 Hb_004635_030--Hb_002478_040 Hb_006538_130 Hb_006538_130 Hb_004635_030--Hb_006538_130 Hb_008695_090 Hb_008695_090 Hb_004635_030--Hb_008695_090 Hb_004635_030--Hb_001477_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.05168 26.4623 31.1717 11.6423 17.4092 7.40001
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.5599 15.9483 10.7755 7.09541 2.4866

CAGE analysis