Hb_004724_260

Information

Type -
Description -
Location Contig4724: 177521-180379
Sequence    

Annotation

kegg
ID pda:103703103
description 40S ribosomal protein S14
nr
ID XP_012435087.1
description PREDICTED: 40S ribosomal protein S14-2-like [Gossypium raimondii]
swissprot
ID Q54EG3
description 40S ribosomal protein S14 OS=Dictyostelium discoideum GN=rps14 PE=3 SV=1
trembl
ID A0A0D2TFW6
description Gossypium raimondii chromosome 9, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_009G400400 PE=4 SV=1
Gene Ontology
ID GO:0005840
description 40s ribosomal protein s14

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44360: 177719-179556 , PASA_asmbl_44362: 180699-180904
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004724_260 0.0 - - PREDICTED: 40S ribosomal protein S14-2-like [Gossypium raimondii]
2 Hb_000638_100 0.0706335637 - - PREDICTED: histone deacetylase 14 [Jatropha curcas]
3 Hb_000033_010 0.0987848889 - - Protein MLO, putative [Ricinus communis]
4 Hb_006915_010 0.1072045755 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
5 Hb_006198_040 0.1092182979 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002122_070 0.1118219244 - - unnamed protein product [Vitis vinifera]
7 Hb_001652_130 0.113063147 - - hypothetical protein B456_002G193900 [Gossypium raimondii]
8 Hb_185474_020 0.1187893708 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
9 Hb_003142_080 0.1238634068 - - receptor serine/threonine kinase, putative [Ricinus communis]
10 Hb_124579_020 0.1247563785 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Jatropha curcas]
11 Hb_000092_060 0.127420291 - - PREDICTED: uncharacterized protein LOC105646505 [Jatropha curcas]
12 Hb_000041_250 0.1275954246 - - PREDICTED: uncharacterized protein LOC105641253 [Jatropha curcas]
13 Hb_039435_020 0.1315970444 - - Lysosomal Pro-X carboxypeptidase, putative [Ricinus communis]
14 Hb_029223_010 0.1372833356 - - PREDICTED: ACT domain-containing protein ACR10 [Jatropha curcas]
15 Hb_114893_010 0.1374735574 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]
16 Hb_002943_020 0.1407060702 - - hypothetical protein POPTR_0075s00240g, partial [Populus trichocarpa]
17 Hb_016924_010 0.1422576119 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001300_240 0.1431948823 - - shikimate dehydrogenase, putative [Ricinus communis]
19 Hb_010311_020 0.1434576105 - - lrr receptor protein kinase, putative [Ricinus communis]
20 Hb_001300_160 0.1458664759 - - PREDICTED: sodium/hydrogen exchanger 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_004724_260 Hb_004724_260 Hb_000638_100 Hb_000638_100 Hb_004724_260--Hb_000638_100 Hb_000033_010 Hb_000033_010 Hb_004724_260--Hb_000033_010 Hb_006915_010 Hb_006915_010 Hb_004724_260--Hb_006915_010 Hb_006198_040 Hb_006198_040 Hb_004724_260--Hb_006198_040 Hb_002122_070 Hb_002122_070 Hb_004724_260--Hb_002122_070 Hb_001652_130 Hb_001652_130 Hb_004724_260--Hb_001652_130 Hb_000638_100--Hb_006915_010 Hb_000041_250 Hb_000041_250 Hb_000638_100--Hb_000041_250 Hb_004052_030 Hb_004052_030 Hb_000638_100--Hb_004052_030 Hb_002943_020 Hb_002943_020 Hb_000638_100--Hb_002943_020 Hb_000638_100--Hb_002122_070 Hb_000033_010--Hb_006198_040 Hb_003142_080 Hb_003142_080 Hb_000033_010--Hb_003142_080 Hb_000033_010--Hb_001652_130 Hb_002636_070 Hb_002636_070 Hb_000033_010--Hb_002636_070 Hb_029223_010 Hb_029223_010 Hb_000033_010--Hb_029223_010 Hb_006915_010--Hb_000041_250 Hb_004162_250 Hb_004162_250 Hb_006915_010--Hb_004162_250 Hb_000107_540 Hb_000107_540 Hb_006915_010--Hb_000107_540 Hb_000679_320 Hb_000679_320 Hb_006915_010--Hb_000679_320 Hb_001541_280 Hb_001541_280 Hb_006915_010--Hb_001541_280 Hb_006198_040--Hb_003142_080 Hb_000130_480 Hb_000130_480 Hb_006198_040--Hb_000130_480 Hb_185474_020 Hb_185474_020 Hb_006198_040--Hb_185474_020 Hb_124579_020 Hb_124579_020 Hb_006198_040--Hb_124579_020 Hb_000836_030 Hb_000836_030 Hb_006198_040--Hb_000836_030 Hb_039435_020 Hb_039435_020 Hb_002122_070--Hb_039435_020 Hb_114893_010 Hb_114893_010 Hb_002122_070--Hb_114893_010 Hb_006053_020 Hb_006053_020 Hb_002122_070--Hb_006053_020 Hb_002122_070--Hb_185474_020 Hb_001300_240 Hb_001300_240 Hb_002122_070--Hb_001300_240 Hb_000675_010 Hb_000675_010 Hb_002122_070--Hb_000675_010 Hb_001652_130--Hb_185474_020 Hb_188075_010 Hb_188075_010 Hb_001652_130--Hb_188075_010 Hb_001652_130--Hb_006198_040 Hb_001652_130--Hb_003142_080 Hb_001652_130--Hb_002943_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.534567 1.77723 1.74438 0 0.0708235
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0437083 0.03438 0.12749 1.39267 6.02609

CAGE analysis