Hb_004724_280

Information

Type -
Description -
Location Contig4724: 188602-189624
Sequence    

Annotation

kegg
ID rcu:RCOM_1281870
description hypothetical protein
nr
ID XP_002523833.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SCW4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1281870 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004724_280 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000336_010 0.0477581573 transcription factor TF Family: C3H zinc finger family protein [Populus trichocarpa]
3 Hb_001123_330 0.0502362396 - - PREDICTED: serine carboxypeptidase-like 45 [Jatropha curcas]
4 Hb_000175_080 0.063978389 - - hypothetical protein JCGZ_06123 [Jatropha curcas]
5 Hb_003420_010 0.0743342976 - - zinc finger protein, putative [Ricinus communis]
6 Hb_007474_010 0.0802361212 - - vacuolar invertase [Manihot esculenta]
7 Hb_002078_070 0.0888695299 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003185_040 0.0919442608 - - PREDICTED: 3-ketoacyl-CoA synthase 11-like [Populus euphratica]
9 Hb_105377_010 0.0921973419 - - hypothetical protein PRUPE_ppa001414mg [Prunus persica]
10 Hb_087717_010 0.097479839 - - hypothetical protein JCGZ_01246 [Jatropha curcas]
11 Hb_123713_010 0.0985952849 - - o-methyltransferase, putative [Ricinus communis]
12 Hb_164853_010 0.099129743 - - Patatin precursor, putative [Ricinus communis]
13 Hb_003055_160 0.1059987627 - - PREDICTED: S-linalool synthase isoform X1 [Jatropha curcas]
14 Hb_004880_040 0.1098770796 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 isoform X1 [Jatropha curcas]
15 Hb_003680_180 0.1104460384 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
16 Hb_013394_110 0.1113242741 - - zinc finger protein, putative [Ricinus communis]
17 Hb_021281_010 0.1147913859 - - Major latex protein, putative [Ricinus communis]
18 Hb_001882_120 0.1147941375 - - PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume]
19 Hb_005743_040 0.114892183 - - JHL22C18.10 [Jatropha curcas]
20 Hb_013405_170 0.114931272 - - PREDICTED: sec-independent protein translocase protein TATB, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_004724_280 Hb_004724_280 Hb_000336_010 Hb_000336_010 Hb_004724_280--Hb_000336_010 Hb_001123_330 Hb_001123_330 Hb_004724_280--Hb_001123_330 Hb_000175_080 Hb_000175_080 Hb_004724_280--Hb_000175_080 Hb_003420_010 Hb_003420_010 Hb_004724_280--Hb_003420_010 Hb_007474_010 Hb_007474_010 Hb_004724_280--Hb_007474_010 Hb_002078_070 Hb_002078_070 Hb_004724_280--Hb_002078_070 Hb_000336_010--Hb_000175_080 Hb_000336_010--Hb_001123_330 Hb_000336_010--Hb_003420_010 Hb_003185_040 Hb_003185_040 Hb_000336_010--Hb_003185_040 Hb_105377_010 Hb_105377_010 Hb_000336_010--Hb_105377_010 Hb_001123_330--Hb_000175_080 Hb_003680_180 Hb_003680_180 Hb_001123_330--Hb_003680_180 Hb_001123_330--Hb_003185_040 Hb_001123_330--Hb_007474_010 Hb_000175_080--Hb_003420_010 Hb_000175_080--Hb_003680_180 Hb_000059_190 Hb_000059_190 Hb_000175_080--Hb_000059_190 Hb_164853_010 Hb_164853_010 Hb_003420_010--Hb_164853_010 Hb_086720_010 Hb_086720_010 Hb_003420_010--Hb_086720_010 Hb_007407_020 Hb_007407_020 Hb_003420_010--Hb_007407_020 Hb_000295_140 Hb_000295_140 Hb_003420_010--Hb_000295_140 Hb_007474_010--Hb_000336_010 Hb_004880_040 Hb_004880_040 Hb_007474_010--Hb_004880_040 Hb_007474_010--Hb_000175_080 Hb_003464_010 Hb_003464_010 Hb_007474_010--Hb_003464_010 Hb_087717_010 Hb_087717_010 Hb_002078_070--Hb_087717_010 Hb_002078_070--Hb_000336_010 Hb_002078_070--Hb_105377_010 Hb_002078_070--Hb_003420_010 Hb_002078_070--Hb_001123_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0550506 0.510618 74.8057 93.8223 0 0.0493627
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.101125 0.172201 0.20971 3.42196

CAGE analysis