Hb_004724_290

Information

Type transcription factor
Description TF Family: NAC
Location Contig4724: 194397-199222
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44370: 196225-196908 , PASA_asmbl_44371: 194898-199373 , PASA_asmbl_44374: 195668-195844
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004724_290 0.0 transcription factor TF Family: NAC -
2 Hb_019978_010 0.0548428995 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like isoform X2 [Jatropha curcas]
3 Hb_002006_110 0.0632782317 transcription factor TF Family: LFY LEAFY-like protein [Pistacia chinensis]
4 Hb_011429_010 0.0635904418 - - hypothetical protein POPTR_0188s00230g [Populus trichocarpa]
5 Hb_006916_220 0.0651436726 - - hypothetical protein JCGZ_20099 [Jatropha curcas]
6 Hb_010136_020 0.0662618678 - - stress-induced receptor-like kinase [Medicago truncatula]
7 Hb_184752_010 0.0668891158 - - PREDICTED: uncharacterized protein LOC105642593 [Jatropha curcas]
8 Hb_036754_040 0.0795883385 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
9 Hb_000769_030 0.0800477256 - - ankyrin repeat-containing protein, putative [Ricinus communis]
10 Hb_000373_220 0.0811488377 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
11 Hb_013591_010 0.0925818743 - - Mitogen-activated protein kinase kinase kinase 1 [Glycine soja]
12 Hb_002422_020 0.0946000746 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
13 Hb_053935_010 0.1002325173 - - hypothetical protein EUGRSUZ_G02294 [Eucalyptus grandis]
14 Hb_001677_140 0.1021604058 - - PREDICTED: uncharacterized protein LOC102622520 isoform X1 [Citrus sinensis]
15 Hb_000731_020 0.1043794781 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT10-like [Jatropha curcas]
16 Hb_128460_020 0.1082335069 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 isoform X1 [Nicotiana tomentosiformis]
17 Hb_003674_010 0.1109768689 - - purine transporter, putative [Ricinus communis]
18 Hb_001511_200 0.1111924208 - - Embryonic abundant protein, putative [Ricinus communis]
19 Hb_010369_010 0.1136812354 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004724_310 0.1151522479 transcription factor TF Family: MYB-related PREDICTED: transcription factor DIVARICATA-like [Jatropha curcas]

Gene co-expression network

sample Hb_004724_290 Hb_004724_290 Hb_019978_010 Hb_019978_010 Hb_004724_290--Hb_019978_010 Hb_002006_110 Hb_002006_110 Hb_004724_290--Hb_002006_110 Hb_011429_010 Hb_011429_010 Hb_004724_290--Hb_011429_010 Hb_006916_220 Hb_006916_220 Hb_004724_290--Hb_006916_220 Hb_010136_020 Hb_010136_020 Hb_004724_290--Hb_010136_020 Hb_184752_010 Hb_184752_010 Hb_004724_290--Hb_184752_010 Hb_019978_010--Hb_002006_110 Hb_019978_010--Hb_010136_020 Hb_036754_040 Hb_036754_040 Hb_019978_010--Hb_036754_040 Hb_019978_010--Hb_184752_010 Hb_019978_010--Hb_006916_220 Hb_002006_110--Hb_010136_020 Hb_002006_110--Hb_036754_040 Hb_001677_140 Hb_001677_140 Hb_002006_110--Hb_001677_140 Hb_002006_110--Hb_184752_010 Hb_000769_030 Hb_000769_030 Hb_011429_010--Hb_000769_030 Hb_098175_010 Hb_098175_010 Hb_011429_010--Hb_098175_010 Hb_128460_020 Hb_128460_020 Hb_011429_010--Hb_128460_020 Hb_010369_010 Hb_010369_010 Hb_011429_010--Hb_010369_010 Hb_003602_080 Hb_003602_080 Hb_011429_010--Hb_003602_080 Hb_004724_310 Hb_004724_310 Hb_006916_220--Hb_004724_310 Hb_006916_220--Hb_002006_110 Hb_006916_220--Hb_010136_020 Hb_006916_220--Hb_184752_010 Hb_010136_020--Hb_036754_040 Hb_010136_020--Hb_001677_140 Hb_010136_020--Hb_184752_010 Hb_034581_010 Hb_034581_010 Hb_010136_020--Hb_034581_010 Hb_184752_010--Hb_036754_040 Hb_184752_010--Hb_001677_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.272193 0.0976414 0.153731 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis