Hb_004724_300

Information

Type transcription factor
Description TF Family: NAC
Location Contig4724: 194790-195883
Sequence    

Annotation

kegg
ID pop:POPTR_0001s22630g
description POPTRDRAFT_751969; NAC domain-containing protein 90
nr
ID XP_012076136.1
description PREDICTED: NAC domain-containing protein 90-like [Jatropha curcas]
swissprot
ID Q9FMR3
description NAC domain-containing protein 90 OS=Arabidopsis thaliana GN=NAC090 PE=2 SV=1
trembl
ID R4N7M3
description NAC transcription factor 037 OS=Jatropha curcas GN=JCGZ_12708 PE=4 SV=1
Gene Ontology
ID GO:0003677
description nac domain-containing protein 90

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44369: 194563-194697 , PASA_asmbl_44372: 194831-195255
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004724_300 0.0 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 90-like [Jatropha curcas]
2 Hb_001821_050 0.0581409185 - - hypothetical protein CICLE_v10032084mg [Citrus clementina]
3 Hb_134022_010 0.0802940157 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
4 Hb_002725_080 0.0842423984 - - protein phosphatase 2c, putative [Ricinus communis]
5 Hb_007102_010 0.0907215317 - - Granule-bound starch synthase 1, chloroplastic/amyloplastic [Gossypium arboreum]
6 Hb_004112_050 0.093440604 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
7 Hb_001677_120 0.0958846616 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
8 Hb_000325_070 0.1005641202 - - ABC transporter family protein [Hevea brasiliensis]
9 Hb_009557_080 0.106736428 - - PREDICTED: glutaredoxin-C9-like [Populus euphratica]
10 Hb_006573_280 0.1070271578 - - PREDICTED: probable membrane-associated kinase regulator 5 [Jatropha curcas]
11 Hb_000567_110 0.1083430297 - - hypothetical protein JCGZ_21556 [Jatropha curcas]
12 Hb_002010_080 0.1117281068 - - PREDICTED: probable receptor-like protein kinase At1g11050 [Jatropha curcas]
13 Hb_004393_030 0.111811129 - - CBL-interacting protein kinase 6 [Populus trichocarpa]
14 Hb_002218_080 0.1138438631 - - Ankyrin repeat family protein, putative [Theobroma cacao]
15 Hb_005694_150 0.113918471 - - PREDICTED: probable mitochondrial chaperone BCS1-A [Jatropha curcas]
16 Hb_007007_030 0.1140358198 - - conserved hypothetical protein [Ricinus communis]
17 Hb_004837_110 0.1183685725 - - PREDICTED: MATE efflux family protein 1 isoform X1 [Jatropha curcas]
18 Hb_004945_050 0.1184047461 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0008s08740g [Populus trichocarpa]
19 Hb_002375_080 0.1202143005 - - conserved hypothetical protein [Ricinus communis]
20 Hb_012799_040 0.1206471061 - - PREDICTED: transmembrane ascorbate ferrireductase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_004724_300 Hb_004724_300 Hb_001821_050 Hb_001821_050 Hb_004724_300--Hb_001821_050 Hb_134022_010 Hb_134022_010 Hb_004724_300--Hb_134022_010 Hb_002725_080 Hb_002725_080 Hb_004724_300--Hb_002725_080 Hb_007102_010 Hb_007102_010 Hb_004724_300--Hb_007102_010 Hb_004112_050 Hb_004112_050 Hb_004724_300--Hb_004112_050 Hb_001677_120 Hb_001677_120 Hb_004724_300--Hb_001677_120 Hb_001821_050--Hb_007102_010 Hb_001821_050--Hb_001677_120 Hb_001821_050--Hb_134022_010 Hb_004837_110 Hb_004837_110 Hb_001821_050--Hb_004837_110 Hb_002375_080 Hb_002375_080 Hb_001821_050--Hb_002375_080 Hb_008810_030 Hb_008810_030 Hb_134022_010--Hb_008810_030 Hb_000402_180 Hb_000402_180 Hb_134022_010--Hb_000402_180 Hb_036492_020 Hb_036492_020 Hb_134022_010--Hb_036492_020 Hb_004393_030 Hb_004393_030 Hb_134022_010--Hb_004393_030 Hb_024650_010 Hb_024650_010 Hb_002725_080--Hb_024650_010 Hb_010417_110 Hb_010417_110 Hb_002725_080--Hb_010417_110 Hb_000574_230 Hb_000574_230 Hb_002725_080--Hb_000574_230 Hb_009557_080 Hb_009557_080 Hb_002725_080--Hb_009557_080 Hb_006002_020 Hb_006002_020 Hb_002725_080--Hb_006002_020 Hb_007102_010--Hb_004837_110 Hb_002890_320 Hb_002890_320 Hb_007102_010--Hb_002890_320 Hb_007102_010--Hb_002375_080 Hb_007102_010--Hb_004112_050 Hb_001310_080 Hb_001310_080 Hb_004112_050--Hb_001310_080 Hb_002218_080 Hb_002218_080 Hb_004112_050--Hb_002218_080 Hb_007007_030 Hb_007007_030 Hb_004112_050--Hb_007007_030 Hb_113396_010 Hb_113396_010 Hb_004112_050--Hb_113396_010 Hb_001677_120--Hb_002375_080 Hb_007007_090 Hb_007007_090 Hb_001677_120--Hb_007007_090 Hb_006573_280 Hb_006573_280 Hb_001677_120--Hb_006573_280 Hb_004945_050 Hb_004945_050 Hb_001677_120--Hb_004945_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0267204 12.1244 5.35457 6.16269 0 0.0625471
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.760117 4.58499

CAGE analysis