Hb_004724_310

Information

Type transcription factor
Description TF Family: MYB-related
Location Contig4724: 205488-206937
Sequence    

Annotation

kegg
ID rcu:RCOM_1281990
description DNA binding protein, putative
nr
ID XP_012070162.1
description PREDICTED: transcription factor DIVARICATA-like [Jatropha curcas]
swissprot
ID Q8S9H7
description Transcription factor DIVARICATA OS=Antirrhinum majus GN=DIVARICATA PE=2 SV=1
trembl
ID A0A067KUN7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04192 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor divaricata-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44375: 205612-207190
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004724_310 0.0 transcription factor TF Family: MYB-related PREDICTED: transcription factor DIVARICATA-like [Jatropha curcas]
2 Hb_006916_220 0.0717683072 - - hypothetical protein JCGZ_20099 [Jatropha curcas]
3 Hb_000996_100 0.0856877785 - - Nucleotide binding, putative [Theobroma cacao]
4 Hb_008963_010 0.0862869881 desease resistance Gene Name: LRR_4 PREDICTED: disease resistance protein RPM1-like isoform X1 [Populus euphratica]
5 Hb_000925_110 0.0885338145 - - Spotted leaf protein, putative [Ricinus communis]
6 Hb_000731_020 0.0986441264 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT10-like [Jatropha curcas]
7 Hb_000714_080 0.102864211 transcription factor TF Family: Trihelix GT-2 factor [Glycine max]
8 Hb_001511_200 0.1050814752 - - Embryonic abundant protein, putative [Ricinus communis]
9 Hb_002006_110 0.1062804678 transcription factor TF Family: LFY LEAFY-like protein [Pistacia chinensis]
10 Hb_010136_020 0.1063746632 - - stress-induced receptor-like kinase [Medicago truncatula]
11 Hb_019978_010 0.1067845988 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like isoform X2 [Jatropha curcas]
12 Hb_001677_140 0.1092292262 - - PREDICTED: uncharacterized protein LOC102622520 isoform X1 [Citrus sinensis]
13 Hb_184752_010 0.1109489799 - - PREDICTED: uncharacterized protein LOC105642593 [Jatropha curcas]
14 Hb_096930_010 0.114596667 - - hypothetical protein JCGZ_27059 [Jatropha curcas]
15 Hb_004724_290 0.1151522479 transcription factor TF Family: NAC -
16 Hb_128851_020 0.1161303068 - - ankyrin repeat-containing protein, putative [Ricinus communis]
17 Hb_004924_020 0.1167625543 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_036754_040 0.1178162421 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
19 Hb_002066_050 0.12281411 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF109-like [Jatropha curcas]
20 Hb_000373_220 0.1242033289 - - Auxin-induced protein 5NG4, putative [Ricinus communis]

Gene co-expression network

sample Hb_004724_310 Hb_004724_310 Hb_006916_220 Hb_006916_220 Hb_004724_310--Hb_006916_220 Hb_000996_100 Hb_000996_100 Hb_004724_310--Hb_000996_100 Hb_008963_010 Hb_008963_010 Hb_004724_310--Hb_008963_010 Hb_000925_110 Hb_000925_110 Hb_004724_310--Hb_000925_110 Hb_000731_020 Hb_000731_020 Hb_004724_310--Hb_000731_020 Hb_000714_080 Hb_000714_080 Hb_004724_310--Hb_000714_080 Hb_004724_290 Hb_004724_290 Hb_006916_220--Hb_004724_290 Hb_002006_110 Hb_002006_110 Hb_006916_220--Hb_002006_110 Hb_019978_010 Hb_019978_010 Hb_006916_220--Hb_019978_010 Hb_010136_020 Hb_010136_020 Hb_006916_220--Hb_010136_020 Hb_184752_010 Hb_184752_010 Hb_006916_220--Hb_184752_010 Hb_138705_010 Hb_138705_010 Hb_000996_100--Hb_138705_010 Hb_000996_100--Hb_006916_220 Hb_000996_100--Hb_008963_010 Hb_004924_020 Hb_004924_020 Hb_000996_100--Hb_004924_020 Hb_003968_010 Hb_003968_010 Hb_000996_100--Hb_003968_010 Hb_008963_010--Hb_004924_020 Hb_008963_010--Hb_000714_080 Hb_091826_020 Hb_091826_020 Hb_008963_010--Hb_091826_020 Hb_158110_010 Hb_158110_010 Hb_008963_010--Hb_158110_010 Hb_002066_050 Hb_002066_050 Hb_000925_110--Hb_002066_050 Hb_000656_350 Hb_000656_350 Hb_000925_110--Hb_000656_350 Hb_000925_110--Hb_000714_080 Hb_096930_010 Hb_096930_010 Hb_000925_110--Hb_096930_010 Hb_000665_090 Hb_000665_090 Hb_000925_110--Hb_000665_090 Hb_000221_280 Hb_000221_280 Hb_000731_020--Hb_000221_280 Hb_000731_020--Hb_019978_010 Hb_000313_190 Hb_000313_190 Hb_000731_020--Hb_000313_190 Hb_000731_020--Hb_006916_220 Hb_003071_040 Hb_003071_040 Hb_000731_020--Hb_003071_040 Hb_000714_080--Hb_002066_050 Hb_000714_080--Hb_000665_090 Hb_000904_110 Hb_000904_110 Hb_000714_080--Hb_000904_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0478097 91.4983 45.8917 47.3455 0.0355144 0.100816
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0875166 0 0 2.27307 0.810469

CAGE analysis