Hb_004724_330

Information

Type -
Description -
Location Contig4724: 213962-215458
Sequence    

Annotation

kegg
ID rcu:RCOM_1282010
description Capsanthin/capsorubin synthase, chloroplast precursor, putative (EC:5.3.99.8)
nr
ID XP_002523837.1
description Capsanthin/capsorubin synthase, chloroplast precursor, putative [Ricinus communis]
swissprot
ID Q9SEA0
description Capsanthin/capsorubin synthase, chromoplast OS=Citrus sinensis GN=CCS PE=3 SV=1
trembl
ID B9SCW8
description Capsanthin/capsorubin synthase, chloroplast, putative OS=Ricinus communis GN=RCOM_1282010 PE=4 SV=1
Gene Ontology
ID GO:0016705
description capsanthin capsorubin chromoplast-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004724_330 0.0 - - Capsanthin/capsorubin synthase, chloroplast precursor, putative [Ricinus communis]
2 Hb_000200_170 0.0975796855 - - PREDICTED: E3 ubiquitin-protein ligase RHA2A-like [Populus euphratica]
3 Hb_002849_070 0.113025912 - - PREDICTED: protein BPS1, chloroplastic [Jatropha curcas]
4 Hb_143766_030 0.1215236087 - - protein with unknown function [Ricinus communis]
5 Hb_000056_280 0.1259871017 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
6 Hb_000056_080 0.1277515243 - - PREDICTED: protein kinase 2B, chloroplastic [Jatropha curcas]
7 Hb_000735_140 0.1299775517 - - 3-glucanase family protein [Populus trichocarpa]
8 Hb_000069_780 0.1305337973 - - atpob1, putative [Ricinus communis]
9 Hb_000836_600 0.1377753256 - - PREDICTED: delta(8)-fatty-acid desaturase 2 [Jatropha curcas]
10 Hb_003752_120 0.1390792483 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Jatropha curcas]
11 Hb_033363_010 0.1391405105 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 8 [Jatropha curcas]
12 Hb_000116_210 0.1399314626 - - PREDICTED: uncharacterized protein LOC105628567 [Jatropha curcas]
13 Hb_001133_010 0.1399415027 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001369_780 0.1406534622 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000203_270 0.1413014584 - - alpha-xylosidase, putative [Ricinus communis]
16 Hb_002875_070 0.1416058919 - - PREDICTED: probable mitochondrial chaperone BCS1-A [Jatropha curcas]
17 Hb_000805_190 0.1433033624 transcription factor TF Family: GRAS PREDICTED: uncharacterized protein LOC103323607 [Prunus mume]
18 Hb_000111_370 0.1445836304 - - PREDICTED: cation/H(+) antiporter 2-like [Jatropha curcas]
19 Hb_014720_050 0.1449577153 - - PREDICTED: serine/threonine-protein kinase ATM-like [Jatropha curcas]
20 Hb_004631_110 0.1453198088 - - ring finger protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_004724_330 Hb_004724_330 Hb_000200_170 Hb_000200_170 Hb_004724_330--Hb_000200_170 Hb_002849_070 Hb_002849_070 Hb_004724_330--Hb_002849_070 Hb_143766_030 Hb_143766_030 Hb_004724_330--Hb_143766_030 Hb_000056_280 Hb_000056_280 Hb_004724_330--Hb_000056_280 Hb_000056_080 Hb_000056_080 Hb_004724_330--Hb_000056_080 Hb_000735_140 Hb_000735_140 Hb_004724_330--Hb_000735_140 Hb_000200_170--Hb_002849_070 Hb_000200_170--Hb_000056_080 Hb_000203_270 Hb_000203_270 Hb_000200_170--Hb_000203_270 Hb_000200_170--Hb_143766_030 Hb_001818_060 Hb_001818_060 Hb_000200_170--Hb_001818_060 Hb_002849_070--Hb_000056_080 Hb_002849_070--Hb_000203_270 Hb_002849_070--Hb_000735_140 Hb_033363_010 Hb_033363_010 Hb_002849_070--Hb_033363_010 Hb_002849_070--Hb_001818_060 Hb_002248_120 Hb_002248_120 Hb_143766_030--Hb_002248_120 Hb_003605_220 Hb_003605_220 Hb_143766_030--Hb_003605_220 Hb_143766_030--Hb_000735_140 Hb_023344_110 Hb_023344_110 Hb_143766_030--Hb_023344_110 Hb_000069_780 Hb_000069_780 Hb_143766_030--Hb_000069_780 Hb_000805_190 Hb_000805_190 Hb_000056_280--Hb_000805_190 Hb_000465_260 Hb_000465_260 Hb_000056_280--Hb_000465_260 Hb_000072_020 Hb_000072_020 Hb_000056_280--Hb_000072_020 Hb_002151_100 Hb_002151_100 Hb_000056_280--Hb_002151_100 Hb_009646_010 Hb_009646_010 Hb_000056_280--Hb_009646_010 Hb_000056_280--Hb_033363_010 Hb_000056_080--Hb_000203_270 Hb_003670_030 Hb_003670_030 Hb_000056_080--Hb_003670_030 Hb_000056_080--Hb_000735_140 Hb_003849_190 Hb_003849_190 Hb_000056_080--Hb_003849_190 Hb_000735_140--Hb_003849_190 Hb_000111_370 Hb_000111_370 Hb_000735_140--Hb_000111_370 Hb_000735_080 Hb_000735_080 Hb_000735_140--Hb_000735_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.568538 10.6918 4.20518 8.61502 1.19044 1.87104
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.782527 0.812637 2.08182 3.23398 2.57567

CAGE analysis