Hb_004724_340

Information

Type -
Description -
Location Contig4724: 216377-220719
Sequence    

Annotation

kegg
ID rcu:RCOM_1282020
description hypothetical protein
nr
ID XP_012070158.1
description PREDICTED: mitochondrial fission protein ELM1 [Jatropha curcas]
swissprot
ID Q93YN4
description Mitochondrial fission protein ELM1 OS=Arabidopsis thaliana GN=ELM1 PE=1 SV=1
trembl
ID A0A067L6X4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04189 PE=4 SV=1
Gene Ontology
ID GO:0000266
description mitochondrial fission protein elm1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44380: 216373-220662
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004724_340 0.0 - - PREDICTED: mitochondrial fission protein ELM1 [Jatropha curcas]
2 Hb_001360_050 0.0417096685 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]
3 Hb_010080_090 0.0715286052 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Jatropha curcas]
4 Hb_012675_060 0.0727389571 - - hypothetical protein PRUPE_ppa007715mg [Prunus persica]
5 Hb_001833_110 0.0730666277 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000347_410 0.0754927861 - - PREDICTED: transcription initiation factor TFIID subunit 9 [Jatropha curcas]
7 Hb_002471_080 0.0756866336 - - oxidoreductase, putative [Ricinus communis]
8 Hb_000625_070 0.0758567814 transcription factor TF Family: CSD PREDICTED: cold shock domain-containing protein 3 [Jatropha curcas]
9 Hb_002963_010 0.0779120309 - - PREDICTED: autophagy-related protein 18b-like isoform X1 [Jatropha curcas]
10 Hb_001832_010 0.0784619302 - - PREDICTED: uncharacterized protein LOC105637890 isoform X1 [Jatropha curcas]
11 Hb_000025_120 0.0797565553 - - PREDICTED: uncharacterized protein LOC105628946 isoform X1 [Jatropha curcas]
12 Hb_000170_010 0.0815449766 - - o-methyltransferase, putative [Ricinus communis]
13 Hb_000146_020 0.0827803426 - - PREDICTED: protein TIC 21, chloroplastic [Jatropha curcas]
14 Hb_015807_040 0.0828966178 - - PREDICTED: polycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM [Jatropha curcas]
15 Hb_001083_020 0.082940441 - - -
16 Hb_000834_270 0.0837894299 - - PREDICTED: uncharacterized protein LOC105647032 isoform X2 [Jatropha curcas]
17 Hb_029866_020 0.0855472834 - - PREDICTED: mitochondrial carrier protein MTM1 [Jatropha curcas]
18 Hb_001396_100 0.0857531331 - - DNA binding protein, putative [Ricinus communis]
19 Hb_000240_090 0.0861242031 - - Rab5 [Hevea brasiliensis]
20 Hb_000046_290 0.0862261893 - - PREDICTED: tubby-like F-box protein 3 [Tarenaya hassleriana]

Gene co-expression network

sample Hb_004724_340 Hb_004724_340 Hb_001360_050 Hb_001360_050 Hb_004724_340--Hb_001360_050 Hb_010080_090 Hb_010080_090 Hb_004724_340--Hb_010080_090 Hb_012675_060 Hb_012675_060 Hb_004724_340--Hb_012675_060 Hb_001833_110 Hb_001833_110 Hb_004724_340--Hb_001833_110 Hb_000347_410 Hb_000347_410 Hb_004724_340--Hb_000347_410 Hb_002471_080 Hb_002471_080 Hb_004724_340--Hb_002471_080 Hb_001360_050--Hb_001833_110 Hb_001360_050--Hb_002471_080 Hb_005092_060 Hb_005092_060 Hb_001360_050--Hb_005092_060 Hb_002759_060 Hb_002759_060 Hb_001360_050--Hb_002759_060 Hb_001360_050--Hb_012675_060 Hb_010080_090--Hb_012675_060 Hb_000834_270 Hb_000834_270 Hb_010080_090--Hb_000834_270 Hb_002963_010 Hb_002963_010 Hb_010080_090--Hb_002963_010 Hb_004586_320 Hb_004586_320 Hb_010080_090--Hb_004586_320 Hb_010080_090--Hb_001360_050 Hb_012753_160 Hb_012753_160 Hb_012675_060--Hb_012753_160 Hb_012675_060--Hb_000834_270 Hb_012675_060--Hb_004586_320 Hb_000574_480 Hb_000574_480 Hb_012675_060--Hb_000574_480 Hb_000173_220 Hb_000173_220 Hb_012675_060--Hb_000173_220 Hb_001833_110--Hb_002759_060 Hb_015807_040 Hb_015807_040 Hb_001833_110--Hb_015807_040 Hb_001832_010 Hb_001832_010 Hb_001833_110--Hb_001832_010 Hb_000041_050 Hb_000041_050 Hb_001833_110--Hb_000041_050 Hb_000146_020 Hb_000146_020 Hb_000347_410--Hb_000146_020 Hb_029866_020 Hb_029866_020 Hb_000347_410--Hb_029866_020 Hb_000025_120 Hb_000025_120 Hb_000347_410--Hb_000025_120 Hb_003376_030 Hb_003376_030 Hb_000347_410--Hb_003376_030 Hb_000347_410--Hb_004586_320 Hb_000240_090 Hb_000240_090 Hb_000347_410--Hb_000240_090 Hb_000046_290 Hb_000046_290 Hb_002471_080--Hb_000046_290 Hb_001829_060 Hb_001829_060 Hb_002471_080--Hb_001829_060 Hb_124755_010 Hb_124755_010 Hb_002471_080--Hb_124755_010 Hb_000329_310 Hb_000329_310 Hb_002471_080--Hb_000329_310 Hb_000024_030 Hb_000024_030 Hb_002471_080--Hb_000024_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.56758 6.21398 5.49143 7.8767 13.1939 15.0432
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
30.1596 26.1375 25.3134 11.749 9.23744

CAGE analysis