Hb_004724_360

Information

Type -
Description -
Location Contig4724: 223529-229106
Sequence    

Annotation

kegg
ID pop:POPTR_0009s16170g
description POPTRDRAFT_648978; OTU-like cysteine protease family protein
nr
ID XP_002313608.1
description OTU-like cysteine protease family protein [Populus trichocarpa]
swissprot
ID Q2YDU3
description OTU domain-containing protein 5 OS=Rattus norvegicus GN=Otud5 PE=2 SV=2
trembl
ID B9HQ41
description OTU-like cysteine protease family protein OS=Populus trichocarpa GN=POPTR_0009s16170g PE=4 SV=1
Gene Ontology
ID GO:0004843
description otu domain-containing protein 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44381: 223533-229193 , PASA_asmbl_44382: 223622-229193 , PASA_asmbl_44383: 226861-227329 , PASA_asmbl_44385: 224192-224313
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004724_360 0.0 - - OTU-like cysteine protease family protein [Populus trichocarpa]
2 Hb_000076_080 0.0447990228 - - PREDICTED: protein MOS2 [Jatropha curcas]
3 Hb_000327_310 0.0541521298 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Jatropha curcas]
4 Hb_001504_160 0.0579957918 - - PREDICTED: nuclear pore complex protein NUP96 [Jatropha curcas]
5 Hb_000684_420 0.0595088961 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
6 Hb_000001_180 0.0603367635 - - PREDICTED: uncharacterized protein LOC105648978 [Jatropha curcas]
7 Hb_005295_040 0.0621438228 - - PREDICTED: polyadenylate-binding protein RBP47-like [Jatropha curcas]
8 Hb_073171_080 0.0632064025 - - PREDICTED: MMS19 nucleotide excision repair protein homolog isoform X1 [Jatropha curcas]
9 Hb_003384_030 0.0708082982 - - PREDICTED: eukaryotic translation initiation factor 2 subunit beta-like [Jatropha curcas]
10 Hb_002133_030 0.0713824946 - - PREDICTED: diphthamide biosynthesis protein 1 [Jatropha curcas]
11 Hb_000152_890 0.0739330396 - - hypothetical protein JCGZ_26265 [Jatropha curcas]
12 Hb_001975_020 0.0742067351 - - PREDICTED: uncharacterized protein LOC105637186 [Jatropha curcas]
13 Hb_153547_010 0.0745147833 - - PREDICTED: protein FLX-like 4 [Jatropha curcas]
14 Hb_175338_020 0.074543658 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
15 Hb_002400_180 0.0763206156 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001366_040 0.0772138482 transcription factor TF Family: SNF2 PREDICTED: endoribonuclease Dicer homolog 1 [Jatropha curcas]
17 Hb_002725_070 0.0773139862 - - hypothetical protein PRUPE_ppa005949mg [Prunus persica]
18 Hb_000186_280 0.0799730516 - - PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]
19 Hb_002007_250 0.0828088555 - - conserved hypothetical protein [Ricinus communis]
20 Hb_012654_010 0.08344373 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105629849 [Jatropha curcas]

Gene co-expression network

sample Hb_004724_360 Hb_004724_360 Hb_000076_080 Hb_000076_080 Hb_004724_360--Hb_000076_080 Hb_000327_310 Hb_000327_310 Hb_004724_360--Hb_000327_310 Hb_001504_160 Hb_001504_160 Hb_004724_360--Hb_001504_160 Hb_000684_420 Hb_000684_420 Hb_004724_360--Hb_000684_420 Hb_000001_180 Hb_000001_180 Hb_004724_360--Hb_000001_180 Hb_005295_040 Hb_005295_040 Hb_004724_360--Hb_005295_040 Hb_000076_080--Hb_001504_160 Hb_000076_080--Hb_000684_420 Hb_002097_090 Hb_002097_090 Hb_000076_080--Hb_002097_090 Hb_002400_180 Hb_002400_180 Hb_000076_080--Hb_002400_180 Hb_000186_280 Hb_000186_280 Hb_000076_080--Hb_000186_280 Hb_001975_020 Hb_001975_020 Hb_000327_310--Hb_001975_020 Hb_073171_080 Hb_073171_080 Hb_000327_310--Hb_073171_080 Hb_000230_370 Hb_000230_370 Hb_000327_310--Hb_000230_370 Hb_046615_020 Hb_046615_020 Hb_000327_310--Hb_046615_020 Hb_001366_040 Hb_001366_040 Hb_000327_310--Hb_001366_040 Hb_012654_010 Hb_012654_010 Hb_001504_160--Hb_012654_010 Hb_000230_330 Hb_000230_330 Hb_001504_160--Hb_000230_330 Hb_000107_100 Hb_000107_100 Hb_001504_160--Hb_000107_100 Hb_003384_030 Hb_003384_030 Hb_001504_160--Hb_003384_030 Hb_000684_420--Hb_002097_090 Hb_000684_420--Hb_000186_280 Hb_000684_420--Hb_002400_180 Hb_000684_420--Hb_073171_080 Hb_000001_180--Hb_003384_030 Hb_002818_040 Hb_002818_040 Hb_000001_180--Hb_002818_040 Hb_005914_230 Hb_005914_230 Hb_000001_180--Hb_005914_230 Hb_005314_010 Hb_005314_010 Hb_000001_180--Hb_005314_010 Hb_004678_020 Hb_004678_020 Hb_000001_180--Hb_004678_020 Hb_002725_070 Hb_002725_070 Hb_005295_040--Hb_002725_070 Hb_005295_040--Hb_001975_020 Hb_000367_290 Hb_000367_290 Hb_005295_040--Hb_000367_290 Hb_005635_010 Hb_005635_010 Hb_005295_040--Hb_005635_010 Hb_005295_040--Hb_000327_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
223.053 104.878 36.8319 33.0916 247.996 260.342
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
91.3664 86.8253 93.9518 71.9138 42.0809

CAGE analysis