Hb_004724_410

Information

Type -
Description -
Location Contig4724: 260948-265840
Sequence    

Annotation

kegg
ID rcu:RCOM_1282210
description DNA helicase, putative
nr
ID XP_012068094.1
description PREDICTED: ruvB-like protein 1 isoform X2 [Jatropha curcas]
swissprot
ID Q9FMR9
description RuvB-like protein 1 OS=Arabidopsis thaliana GN=RIN1 PE=1 SV=1
trembl
ID A0A067KZC1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15939 PE=4 SV=1
Gene Ontology
ID GO:0005524
description ruvb-like protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44393: 260977-265977
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004724_410 0.0 - - PREDICTED: ruvB-like protein 1 isoform X2 [Jatropha curcas]
2 Hb_000025_270 0.0884909707 - - PREDICTED: proteinaceous RNase P 1, chloroplastic/mitochondrial-like [Jatropha curcas]
3 Hb_001623_280 0.0925889735 - - PREDICTED: chaperonin CPN60-2, mitochondrial [Jatropha curcas]
4 Hb_001348_080 0.1036324562 - - PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Jatropha curcas]
5 Hb_003020_030 0.1097815412 - - PREDICTED: protein TOC75-3, chloroplastic-like [Populus euphratica]
6 Hb_188281_040 0.1100614013 - - PREDICTED: transcription initiation factor TFIID subunit 12 [Jatropha curcas]
7 Hb_003292_030 0.1167077055 - - PREDICTED: exosome complex component RRP42 [Populus euphratica]
8 Hb_000922_380 0.1181710064 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein MPP10 isoform X1 [Jatropha curcas]
9 Hb_008387_020 0.1187465726 - - PREDICTED: FHA domain-containing protein DDL isoform X1 [Jatropha curcas]
10 Hb_005489_040 0.1192926147 - - PREDICTED: cullin-1 [Jatropha curcas]
11 Hb_007472_090 0.1198922405 - - unnamed protein product [Coffea canephora]
12 Hb_000212_460 0.1200863017 - - PREDICTED: ankyrin-1-like [Jatropha curcas]
13 Hb_003117_030 0.1215998354 - - PREDICTED: protein RCC2 homolog [Jatropha curcas]
14 Hb_002908_040 0.1232995518 - - DNA gyrase subunit A, chloroplast/mitochondrial precursor, putative [Ricinus communis]
15 Hb_026053_040 0.1235443048 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000174_170 0.1244913775 - - PREDICTED: splicing factor U2AF-associated protein 2 isoform X1 [Jatropha curcas]
17 Hb_001098_050 0.1248158642 - - PREDICTED: uncharacterized protein LOC100246941 [Vitis vinifera]
18 Hb_006483_110 0.1254344706 - - PREDICTED: RNA-binding protein Musashi homolog 1 [Jatropha curcas]
19 Hb_003093_040 0.1254816399 - - PREDICTED: nucleolar complex protein 4 homolog isoform X1 [Jatropha curcas]
20 Hb_002053_150 0.1265875887 - - PREDICTED: small nuclear ribonucleoprotein-associated protein B' [Jatropha curcas]

Gene co-expression network

sample Hb_004724_410 Hb_004724_410 Hb_000025_270 Hb_000025_270 Hb_004724_410--Hb_000025_270 Hb_001623_280 Hb_001623_280 Hb_004724_410--Hb_001623_280 Hb_001348_080 Hb_001348_080 Hb_004724_410--Hb_001348_080 Hb_003020_030 Hb_003020_030 Hb_004724_410--Hb_003020_030 Hb_188281_040 Hb_188281_040 Hb_004724_410--Hb_188281_040 Hb_003292_030 Hb_003292_030 Hb_004724_410--Hb_003292_030 Hb_000025_270--Hb_003020_030 Hb_007101_080 Hb_007101_080 Hb_000025_270--Hb_007101_080 Hb_000025_270--Hb_001623_280 Hb_001936_090 Hb_001936_090 Hb_000025_270--Hb_001936_090 Hb_004218_190 Hb_004218_190 Hb_000025_270--Hb_004218_190 Hb_000815_170 Hb_000815_170 Hb_001623_280--Hb_000815_170 Hb_000608_300 Hb_000608_300 Hb_001623_280--Hb_000608_300 Hb_026053_040 Hb_026053_040 Hb_001623_280--Hb_026053_040 Hb_004306_030 Hb_004306_030 Hb_001623_280--Hb_004306_030 Hb_028960_020 Hb_028960_020 Hb_001348_080--Hb_028960_020 Hb_012330_010 Hb_012330_010 Hb_001348_080--Hb_012330_010 Hb_012733_070 Hb_012733_070 Hb_001348_080--Hb_012733_070 Hb_006483_110 Hb_006483_110 Hb_001348_080--Hb_006483_110 Hb_002027_080 Hb_002027_080 Hb_001348_080--Hb_002027_080 Hb_001518_080 Hb_001518_080 Hb_001348_080--Hb_001518_080 Hb_001008_120 Hb_001008_120 Hb_003020_030--Hb_001008_120 Hb_036790_080 Hb_036790_080 Hb_003020_030--Hb_036790_080 Hb_003020_030--Hb_001936_090 Hb_000033_110 Hb_000033_110 Hb_003020_030--Hb_000033_110 Hb_003020_030--Hb_006483_110 Hb_001789_110 Hb_001789_110 Hb_188281_040--Hb_001789_110 Hb_000406_200 Hb_000406_200 Hb_188281_040--Hb_000406_200 Hb_003117_030 Hb_003117_030 Hb_188281_040--Hb_003117_030 Hb_005489_040 Hb_005489_040 Hb_188281_040--Hb_005489_040 Hb_000409_050 Hb_000409_050 Hb_188281_040--Hb_000409_050 Hb_000363_310 Hb_000363_310 Hb_188281_040--Hb_000363_310 Hb_012055_030 Hb_012055_030 Hb_003292_030--Hb_012055_030 Hb_000075_040 Hb_000075_040 Hb_003292_030--Hb_000075_040 Hb_005542_130 Hb_005542_130 Hb_003292_030--Hb_005542_130 Hb_003159_140 Hb_003159_140 Hb_003292_030--Hb_003159_140 Hb_004846_220 Hb_004846_220 Hb_003292_030--Hb_004846_220 Hb_001247_310 Hb_001247_310 Hb_003292_030--Hb_001247_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.74886 3.54902 7.18081 3.49519 6.78937 4.93534
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.67914 4.40363 3.98028 10.644 11.1511

CAGE analysis