Hb_004724_420

Information

Type -
Description -
Location Contig4724: 267194-267757
Sequence    

Annotation

kegg
ID rcu:RCOM_1282230
description fucose synthetase, putative (EC:1.1.1.271)
nr
ID XP_002523849.1
description fucose synthetase, putative [Ricinus communis]
swissprot
ID Q9LMU0
description Putative GDP-L-fucose synthase 2 OS=Arabidopsis thaliana GN=GER2 PE=1 SV=1
trembl
ID B9SCY0
description Fucose synthetase, putative OS=Ricinus communis GN=RCOM_1282230 PE=3 SV=1
Gene Ontology
ID GO:0003824
description gdp-l-fucose synthase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44394: 266987-267362
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004724_420 0.0 - - fucose synthetase, putative [Ricinus communis]
2 Hb_183086_060 0.0692068469 desease resistance Gene Name: AAA PREDICTED: ATPase family AAA domain-containing protein 1-B [Jatropha curcas]
3 Hb_004109_190 0.0772907014 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 25-like isoform X2 [Populus euphratica]
4 Hb_000041_050 0.0788610224 - - PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase [Jatropha curcas]
5 Hb_000700_110 0.084759216 - - Vesicle-associated membrane protein, putative [Ricinus communis]
6 Hb_000614_230 0.0872873475 - - PREDICTED: F-box protein SKIP14 [Jatropha curcas]
7 Hb_005289_030 0.0900392582 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 2 [Jatropha curcas]
8 Hb_003943_040 0.0901004333 - - DNA binding protein, putative [Ricinus communis]
9 Hb_006541_030 0.0901141565 - - PREDICTED: uncharacterized protein LOC105628287 [Jatropha curcas]
10 Hb_001105_070 0.0919635867 - - PREDICTED: uncharacterized protein LOC105632829 [Jatropha curcas]
11 Hb_009773_020 0.0924188251 - - PREDICTED: molybdopterin synthase sulfur carrier subunit [Jatropha curcas]
12 Hb_000496_060 0.0930908448 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH3 [Jatropha curcas]
13 Hb_001248_130 0.0931190879 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X1 [Jatropha curcas]
14 Hb_001366_190 0.0933774699 - - PREDICTED: uncharacterized protein LOC105632829 [Jatropha curcas]
15 Hb_011316_040 0.093468265 - - peptidase, putative [Ricinus communis]
16 Hb_000567_260 0.0938755327 - - BnaA09g41440D [Brassica napus]
17 Hb_004705_100 0.0945510354 - - PREDICTED: inactive leucine-rich repeat receptor-like protein kinase CORYNE [Jatropha curcas]
18 Hb_007380_070 0.0945736799 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
19 Hb_071736_020 0.0946790253 - - hypothetical protein POPTR_0006s10330g [Populus trichocarpa]
20 Hb_002687_110 0.0967702285 - - PREDICTED: uncharacterized WD repeat-containing protein C343.04c isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004724_420 Hb_004724_420 Hb_183086_060 Hb_183086_060 Hb_004724_420--Hb_183086_060 Hb_004109_190 Hb_004109_190 Hb_004724_420--Hb_004109_190 Hb_000041_050 Hb_000041_050 Hb_004724_420--Hb_000041_050 Hb_000700_110 Hb_000700_110 Hb_004724_420--Hb_000700_110 Hb_000614_230 Hb_000614_230 Hb_004724_420--Hb_000614_230 Hb_005289_030 Hb_005289_030 Hb_004724_420--Hb_005289_030 Hb_183086_060--Hb_004109_190 Hb_000029_020 Hb_000029_020 Hb_183086_060--Hb_000029_020 Hb_002687_110 Hb_002687_110 Hb_183086_060--Hb_002687_110 Hb_001248_130 Hb_001248_130 Hb_183086_060--Hb_001248_130 Hb_000205_270 Hb_000205_270 Hb_183086_060--Hb_000205_270 Hb_004109_190--Hb_002687_110 Hb_006541_030 Hb_006541_030 Hb_004109_190--Hb_006541_030 Hb_004976_030 Hb_004976_030 Hb_004109_190--Hb_004976_030 Hb_000567_260 Hb_000567_260 Hb_004109_190--Hb_000567_260 Hb_000656_110 Hb_000656_110 Hb_000041_050--Hb_000656_110 Hb_000041_050--Hb_000700_110 Hb_007441_120 Hb_007441_120 Hb_000041_050--Hb_007441_120 Hb_001833_110 Hb_001833_110 Hb_000041_050--Hb_001833_110 Hb_002759_060 Hb_002759_060 Hb_000041_050--Hb_002759_060 Hb_002477_330 Hb_002477_330 Hb_000041_050--Hb_002477_330 Hb_148644_010 Hb_148644_010 Hb_000700_110--Hb_148644_010 Hb_003092_030 Hb_003092_030 Hb_000700_110--Hb_003092_030 Hb_000347_200 Hb_000347_200 Hb_000700_110--Hb_000347_200 Hb_006198_080 Hb_006198_080 Hb_000700_110--Hb_006198_080 Hb_000700_110--Hb_002477_330 Hb_008695_210 Hb_008695_210 Hb_000614_230--Hb_008695_210 Hb_000614_230--Hb_000567_260 Hb_001329_300 Hb_001329_300 Hb_000614_230--Hb_001329_300 Hb_002006_090 Hb_002006_090 Hb_000614_230--Hb_002006_090 Hb_003266_130 Hb_003266_130 Hb_000614_230--Hb_003266_130 Hb_001085_170 Hb_001085_170 Hb_000614_230--Hb_001085_170 Hb_006117_070 Hb_006117_070 Hb_005289_030--Hb_006117_070 Hb_000230_510 Hb_000230_510 Hb_005289_030--Hb_000230_510 Hb_004254_120 Hb_004254_120 Hb_005289_030--Hb_004254_120 Hb_000058_060 Hb_000058_060 Hb_005289_030--Hb_000058_060 Hb_010504_020 Hb_010504_020 Hb_005289_030--Hb_010504_020 Hb_005289_030--Hb_002759_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.2037 3.36735 2.00598 7.10138 7.19391 12.5224
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.8565 11.9358 14.7891 4.19684 4.17109

CAGE analysis