Hb_004728_030

Information

Type -
Description -
Location Contig4728: 23596-29292
Sequence    

Annotation

kegg
ID csv:101203928
description uncharacterized LOC101203928
nr
ID WP_042516654.1
description hypothetical protein, partial [Lactobacillus brevis]
swissprot
ID P10978
description Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID Q7XLR4
description OSJNBb0093G06.7 protein OS=Oryza sativa subsp. japonica GN=OSJNBb0093G06.7 PE=4 SV=2
Gene Ontology
ID GO:0005488
description retrotransposon ty1-copia subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004728_030 0.0 - - hypothetical protein, partial [Lactobacillus brevis]
2 Hb_132840_120 0.0602080786 - - Vacuolar protein sorting-associated protein 8 like [Glycine soja]
3 Hb_006746_010 0.1216046061 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
4 Hb_012092_070 0.137107713 - - PREDICTED: uncharacterized protein LOC105644084 [Jatropha curcas]
5 Hb_019818_010 0.172433537 - - PREDICTED: potassium transporter 5-like [Jatropha curcas]
6 Hb_008609_030 0.1748727689 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_001184_140 0.1962571782 - - hypothetical protein B456_008G022200 [Gossypium raimondii]
8 Hb_017400_010 0.206225388 - - unnamed protein product [Vitis vinifera]
9 Hb_000836_150 0.2295448651 - - hypothetical protein POPTR_0003s13070g [Populus trichocarpa]
10 Hb_002367_030 0.281346418 - - hypothetical protein POPTR_0001s30725g [Populus trichocarpa]
11 Hb_008054_060 0.2885201124 - - PREDICTED: beta-amyrin synthase-like [Populus euphratica]
12 Hb_067034_020 0.294112431 - - PREDICTED: iridoid synthase [Jatropha curcas]
13 Hb_112440_010 0.3024405984 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
14 Hb_004947_010 0.3057372223 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
15 Hb_000718_050 0.3388603107 - - PREDICTED: histone deacetylase 15 isoform X2 [Populus euphratica]
16 Hb_001102_310 0.3516011493 - - Protein AFR, putative [Ricinus communis]
17 Hb_001439_090 0.3554447953 - - conserved hypothetical protein [Ricinus communis]
18 Hb_094529_020 0.3576472232 - - leucine-rich repeat containing protein, putative [Ricinus communis]
19 Hb_029142_080 0.3580397101 - - Ankyrin repeat family protein, putative [Theobroma cacao]
20 Hb_003996_030 0.3660520818 - - -

Gene co-expression network

sample Hb_004728_030 Hb_004728_030 Hb_132840_120 Hb_132840_120 Hb_004728_030--Hb_132840_120 Hb_006746_010 Hb_006746_010 Hb_004728_030--Hb_006746_010 Hb_012092_070 Hb_012092_070 Hb_004728_030--Hb_012092_070 Hb_019818_010 Hb_019818_010 Hb_004728_030--Hb_019818_010 Hb_008609_030 Hb_008609_030 Hb_004728_030--Hb_008609_030 Hb_001184_140 Hb_001184_140 Hb_004728_030--Hb_001184_140 Hb_132840_120--Hb_012092_070 Hb_132840_120--Hb_019818_010 Hb_017400_010 Hb_017400_010 Hb_132840_120--Hb_017400_010 Hb_132840_120--Hb_001184_140 Hb_132840_120--Hb_006746_010 Hb_006746_010--Hb_008609_030 Hb_006746_010--Hb_012092_070 Hb_000836_150 Hb_000836_150 Hb_006746_010--Hb_000836_150 Hb_029142_080 Hb_029142_080 Hb_006746_010--Hb_029142_080 Hb_012092_070--Hb_019818_010 Hb_012092_070--Hb_017400_010 Hb_002367_030 Hb_002367_030 Hb_012092_070--Hb_002367_030 Hb_012092_070--Hb_001184_140 Hb_019818_010--Hb_017400_010 Hb_019818_010--Hb_002367_030 Hb_019818_010--Hb_001184_140 Hb_008609_030--Hb_132840_120 Hb_015057_030 Hb_015057_030 Hb_008609_030--Hb_015057_030 Hb_008609_030--Hb_029142_080 Hb_002890_080 Hb_002890_080 Hb_008609_030--Hb_002890_080 Hb_001184_140--Hb_017400_010 Hb_001184_140--Hb_002367_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0277148 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0303699 0 0 0

CAGE analysis