Hb_004730_030

Information

Type -
Description -
Location Contig4730: 49989-52036
Sequence    

Annotation

kegg
ID rcu:RCOM_0865020
description synaptonemal complex protein, putative
nr
ID XP_002519838.1
description synaptonemal complex protein, putative [Ricinus communis]
swissprot
ID Q8RX22
description MND1-interacting protein 1 OS=Arabidopsis thaliana GN=MIP1 PE=1 SV=1
trembl
ID B9S1H3
description Synaptonemal complex protein, putative OS=Ricinus communis GN=RCOM_0865020 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004730_030 0.0 - - synaptonemal complex protein, putative [Ricinus communis]
2 Hb_002431_070 0.0002665849 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA11 [Jatropha curcas]
3 Hb_085438_010 0.0003589212 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
4 Hb_000676_210 0.0030351098 - - Cytochrome P450 superfamily protein [Theobroma cacao]
5 Hb_003207_140 0.0033282 - - PREDICTED: protein HOTHEAD [Jatropha curcas]
6 Hb_108331_010 0.0054569753 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
7 Hb_004337_010 0.0062134702 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
8 Hb_002223_010 0.0062282714 - - hypothetical protein VITISV_009489 [Vitis vinifera]
9 Hb_029793_020 0.0066405825 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
10 Hb_029154_020 0.0067637147 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_163434_010 0.0080161272 - - hypothetical protein JCGZ_13470 [Jatropha curcas]
12 Hb_130470_010 0.0172254322 - - hypothetical protein, partial [Pseudomonas tolaasii]
13 Hb_003226_270 0.017674042 - - hypothetical protein POPTR_0014s12390g [Populus trichocarpa]
14 Hb_006995_030 0.0415837423 - - PREDICTED: uncharacterized protein LOC102663993 [Glycine max]
15 Hb_035484_010 0.0908759599 - - PREDICTED: leucine-rich repeat receptor protein kinase EMS1-like [Jatropha curcas]
16 Hb_001072_060 0.1266606932 - - PREDICTED: uncharacterized protein LOC105645525 [Jatropha curcas]
17 Hb_007924_040 0.131803711 - - PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 3 [Populus euphratica]
18 Hb_003683_100 0.1326640531 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
19 Hb_000474_020 0.1342992975 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
20 Hb_007108_060 0.1364221728 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]

Gene co-expression network

sample Hb_004730_030 Hb_004730_030 Hb_002431_070 Hb_002431_070 Hb_004730_030--Hb_002431_070 Hb_085438_010 Hb_085438_010 Hb_004730_030--Hb_085438_010 Hb_000676_210 Hb_000676_210 Hb_004730_030--Hb_000676_210 Hb_003207_140 Hb_003207_140 Hb_004730_030--Hb_003207_140 Hb_108331_010 Hb_108331_010 Hb_004730_030--Hb_108331_010 Hb_004337_010 Hb_004337_010 Hb_004730_030--Hb_004337_010 Hb_002431_070--Hb_085438_010 Hb_002431_070--Hb_000676_210 Hb_002431_070--Hb_003207_140 Hb_002431_070--Hb_108331_010 Hb_002431_070--Hb_004337_010 Hb_085438_010--Hb_000676_210 Hb_085438_010--Hb_003207_140 Hb_085438_010--Hb_108331_010 Hb_085438_010--Hb_004337_010 Hb_000676_210--Hb_003207_140 Hb_000676_210--Hb_004337_010 Hb_002223_010 Hb_002223_010 Hb_000676_210--Hb_002223_010 Hb_003207_140--Hb_004337_010 Hb_003207_140--Hb_002223_010 Hb_029793_020 Hb_029793_020 Hb_003207_140--Hb_029793_020 Hb_029154_020 Hb_029154_020 Hb_003207_140--Hb_029154_020 Hb_163434_010 Hb_163434_010 Hb_108331_010--Hb_163434_010 Hb_108331_010--Hb_000676_210 Hb_108331_010--Hb_003207_140 Hb_004337_010--Hb_002223_010 Hb_004337_010--Hb_029793_020 Hb_004337_010--Hb_029154_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0324962 0 0 0.0671953

CAGE analysis