Hb_004732_010

Information

Type -
Description -
Location Contig4732: 4014-6408
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004732_010 0.0 - - -
2 Hb_000829_080 0.1946755063 - - PREDICTED: uncharacterized protein LOC105641027 [Jatropha curcas]
3 Hb_010288_040 0.212558947 - - PREDICTED: transmembrane protein 205-like [Eucalyptus grandis]
4 Hb_141383_010 0.2679089863 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
5 Hb_007451_060 0.2908714109 - - BAHD family acyltransferase, clade V, putative [Theobroma cacao]
6 Hb_000189_360 0.2933030004 - - Calcium-transporting ATPase 12, plasma membrane-type [Morus notabilis]
7 Hb_115784_010 0.2966506738 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
8 Hb_002316_040 0.2987688695 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
9 Hb_009393_170 0.30718681 - - PREDICTED: vestitone reductase-like [Jatropha curcas]
10 Hb_097730_010 0.3096273818 - - PREDICTED: uncharacterized protein LOC105803540 [Gossypium raimondii]
11 Hb_002180_010 0.3131534649 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
12 Hb_003994_170 0.3169626098 - - Indole-3-acetic acid-induced protein ARG7, putative [Ricinus communis]
13 Hb_081745_010 0.3208850826 - - hypothetical protein CISIN_1g030953mg [Citrus sinensis]
14 Hb_000836_200 0.3220245404 - - -
15 Hb_000186_210 0.327574323 transcription factor TF Family: HB homeobox protein knotted-1, putative [Ricinus communis]
16 Hb_013272_010 0.3329971274 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
17 Hb_117240_010 0.3345741084 - - PREDICTED: uncharacterized protein LOC105775165 [Gossypium raimondii]
18 Hb_001059_020 0.3385898145 - - PREDICTED: FBD-associated F-box protein At4g10400-like [Malus domestica]
19 Hb_008983_010 0.3409557362 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
20 Hb_007105_010 0.3424874234 - - PREDICTED: uncharacterized protein LOC103455579 [Malus domestica]

Gene co-expression network

sample Hb_004732_010 Hb_004732_010 Hb_000829_080 Hb_000829_080 Hb_004732_010--Hb_000829_080 Hb_010288_040 Hb_010288_040 Hb_004732_010--Hb_010288_040 Hb_141383_010 Hb_141383_010 Hb_004732_010--Hb_141383_010 Hb_007451_060 Hb_007451_060 Hb_004732_010--Hb_007451_060 Hb_000189_360 Hb_000189_360 Hb_004732_010--Hb_000189_360 Hb_115784_010 Hb_115784_010 Hb_004732_010--Hb_115784_010 Hb_117240_010 Hb_117240_010 Hb_000829_080--Hb_117240_010 Hb_002180_010 Hb_002180_010 Hb_000829_080--Hb_002180_010 Hb_000829_080--Hb_007451_060 Hb_000829_080--Hb_010288_040 Hb_004788_040 Hb_004788_040 Hb_000829_080--Hb_004788_040 Hb_005779_050 Hb_005779_050 Hb_010288_040--Hb_005779_050 Hb_007105_010 Hb_007105_010 Hb_010288_040--Hb_007105_010 Hb_010288_040--Hb_002180_010 Hb_000454_060 Hb_000454_060 Hb_010288_040--Hb_000454_060 Hb_006907_120 Hb_006907_120 Hb_010288_040--Hb_006907_120 Hb_000931_030 Hb_000931_030 Hb_141383_010--Hb_000931_030 Hb_114839_010 Hb_114839_010 Hb_141383_010--Hb_114839_010 Hb_141383_010--Hb_115784_010 Hb_141383_010--Hb_007451_060 Hb_035746_010 Hb_035746_010 Hb_141383_010--Hb_035746_010 Hb_007451_060--Hb_000189_360 Hb_003992_110 Hb_003992_110 Hb_007451_060--Hb_003992_110 Hb_170207_010 Hb_170207_010 Hb_007451_060--Hb_170207_010 Hb_000529_240 Hb_000529_240 Hb_007451_060--Hb_000529_240 Hb_000189_360--Hb_114839_010 Hb_000189_360--Hb_003992_110 Hb_009139_010 Hb_009139_010 Hb_000189_360--Hb_009139_010 Hb_000713_020 Hb_000713_020 Hb_000189_360--Hb_000713_020 Hb_000179_150 Hb_000179_150 Hb_000189_360--Hb_000179_150 Hb_070820_010 Hb_070820_010 Hb_115784_010--Hb_070820_010 Hb_000086_330 Hb_000086_330 Hb_115784_010--Hb_000086_330 Hb_002301_240 Hb_002301_240 Hb_115784_010--Hb_002301_240 Hb_115784_010--Hb_000931_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0506607 0.169338 0 0 0 0.0582472
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.174401 0.0457168 0 0.055313 0

CAGE analysis