Hb_004732_020

Information

Type -
Description -
Location Contig4732: 22237-39866
Sequence    

Annotation

kegg
ID pop:POPTR_0001s40470g
description glycosyl transferase family 1 family protein
nr
ID XP_011008440.1
description PREDICTED: chitobiosyldiphosphodolichol beta-mannosyltransferase isoform X1 [Populus euphratica]
swissprot
ID Q921Q3
description Chitobiosyldiphosphodolichol beta-mannosyltransferase OS=Mus musculus GN=Alg1 PE=2 SV=3
trembl
ID B9N653
description Glycosyl transferase family 1 family protein OS=Populus trichocarpa GN=POPTR_0001s40470g PE=4 SV=1
Gene Ontology
ID GO:0004578
description chitobiosyldiphosphodolichol beta-mannosyltransferase isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44431: 22273-22884 , PASA_asmbl_44432: 24523-40586
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004732_020 0.0 - - PREDICTED: chitobiosyldiphosphodolichol beta-mannosyltransferase isoform X1 [Populus euphratica]
2 Hb_005147_060 0.0755885031 - - PREDICTED: shaggy-related protein kinase kappa [Populus euphratica]
3 Hb_005211_100 0.0886234573 - - PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform [Jatropha curcas]
4 Hb_003777_310 0.0955276173 - - conserved hypothetical protein [Ricinus communis]
5 Hb_023001_060 0.0972284655 - - PREDICTED: importin-11 [Jatropha curcas]
6 Hb_001691_120 0.0987844185 desease resistance Gene Name: AAA PREDICTED: vesicle-fusing ATPase [Jatropha curcas]
7 Hb_007192_080 0.1006554975 - - PREDICTED: probable serine/threonine-protein kinase WNK3 isoform X2 [Jatropha curcas]
8 Hb_007026_040 0.1026606723 - - PREDICTED: chaperonin 60 subunit alpha 2, chloroplastic-like [Eucalyptus grandis]
9 Hb_001102_150 0.102677614 - - PREDICTED: ethanolamine-phosphate cytidylyltransferase-like isoform X1 [Jatropha curcas]
10 Hb_150986_010 0.1081044245 - - conserved hypothetical protein [Ricinus communis]
11 Hb_009535_020 0.1102429545 - - PREDICTED: V-type proton ATPase subunit a3-like [Jatropha curcas]
12 Hb_000260_170 0.1126644552 - - PREDICTED: putative zinc transporter At3g08650 [Cucumis sativus]
13 Hb_004117_130 0.1130051989 - - PREDICTED: uncharacterized protein LOC105649104 [Jatropha curcas]
14 Hb_032050_040 0.1148318525 - - PREDICTED: protein S-acyltransferase 8-like [Jatropha curcas]
15 Hb_058643_010 0.1151131095 - - hydrolase, putative [Ricinus communis]
16 Hb_000608_320 0.1156417946 - - PREDICTED: uncharacterized protein LOC105644891 [Jatropha curcas]
17 Hb_005170_040 0.115935947 - - PREDICTED: probable protein S-acyltransferase 7 [Jatropha curcas]
18 Hb_002811_060 0.116684545 - - PREDICTED: protein transport protein Sec24-like At4g32640 [Jatropha curcas]
19 Hb_001541_090 0.1177081872 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
20 Hb_002445_120 0.1178749376 - - secretory carrier membrane protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_004732_020 Hb_004732_020 Hb_005147_060 Hb_005147_060 Hb_004732_020--Hb_005147_060 Hb_005211_100 Hb_005211_100 Hb_004732_020--Hb_005211_100 Hb_003777_310 Hb_003777_310 Hb_004732_020--Hb_003777_310 Hb_023001_060 Hb_023001_060 Hb_004732_020--Hb_023001_060 Hb_001691_120 Hb_001691_120 Hb_004732_020--Hb_001691_120 Hb_007192_080 Hb_007192_080 Hb_004732_020--Hb_007192_080 Hb_008103_040 Hb_008103_040 Hb_005147_060--Hb_008103_040 Hb_005147_060--Hb_005211_100 Hb_004659_020 Hb_004659_020 Hb_005147_060--Hb_004659_020 Hb_058643_010 Hb_058643_010 Hb_005147_060--Hb_058643_010 Hb_005147_060--Hb_001691_120 Hb_002783_240 Hb_002783_240 Hb_005211_100--Hb_002783_240 Hb_103012_010 Hb_103012_010 Hb_005211_100--Hb_103012_010 Hb_000116_500 Hb_000116_500 Hb_005211_100--Hb_000116_500 Hb_001488_410 Hb_001488_410 Hb_005211_100--Hb_001488_410 Hb_000608_320 Hb_000608_320 Hb_005211_100--Hb_000608_320 Hb_004102_140 Hb_004102_140 Hb_005211_100--Hb_004102_140 Hb_000318_290 Hb_000318_290 Hb_003777_310--Hb_000318_290 Hb_002445_120 Hb_002445_120 Hb_003777_310--Hb_002445_120 Hb_005170_040 Hb_005170_040 Hb_003777_310--Hb_005170_040 Hb_003777_310--Hb_023001_060 Hb_003777_310--Hb_000608_320 Hb_004032_150 Hb_004032_150 Hb_003777_310--Hb_004032_150 Hb_001344_010 Hb_001344_010 Hb_023001_060--Hb_001344_010 Hb_005490_030 Hb_005490_030 Hb_023001_060--Hb_005490_030 Hb_005054_100 Hb_005054_100 Hb_023001_060--Hb_005054_100 Hb_003697_030 Hb_003697_030 Hb_023001_060--Hb_003697_030 Hb_023001_060--Hb_000318_290 Hb_001691_120--Hb_005054_100 Hb_005679_050 Hb_005679_050 Hb_001691_120--Hb_005679_050 Hb_000169_090 Hb_000169_090 Hb_001691_120--Hb_000169_090 Hb_002811_060 Hb_002811_060 Hb_001691_120--Hb_002811_060 Hb_009535_020 Hb_009535_020 Hb_001691_120--Hb_009535_020 Hb_028639_010 Hb_028639_010 Hb_001691_120--Hb_028639_010 Hb_003195_060 Hb_003195_060 Hb_007192_080--Hb_003195_060 Hb_001866_110 Hb_001866_110 Hb_007192_080--Hb_001866_110 Hb_007192_080--Hb_009535_020 Hb_008511_050 Hb_008511_050 Hb_007192_080--Hb_008511_050 Hb_002200_130 Hb_002200_130 Hb_007192_080--Hb_002200_130 Hb_000014_150 Hb_000014_150 Hb_007192_080--Hb_000014_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.49726 6.21639 7.95328 18.2047 22.2549 33.6368
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.0011 7.28663 16.4882 16.2919 10.7566

CAGE analysis