Hb_004732_070

Information

Type -
Description -
Location Contig4732: 82919-85872
Sequence    

Annotation

kegg
ID rcu:RCOM_0888480
description hypothetical protein
nr
ID XP_002521177.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q940H3
description Protein trichome birefringence-like 36 OS=Arabidopsis thaliana GN=TBL36 PE=2 SV=1
trembl
ID B9S5A8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0888480 PE=4 SV=1
Gene Ontology
ID GO:0010089
description protein trichome birefringence-like 36

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44434: 82909-85897
cDNA
(Sanger)
(ID:Location)		 016_F21.ab1: 82909-84491

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004732_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000310_040 0.0921942921 - - PREDICTED: adenine phosphoribosyltransferase 3 [Jatropha curcas]
3 Hb_000190_160 0.0969182542 - - PREDICTED: uncharacterized protein LOC105649940 isoform X2 [Jatropha curcas]
4 Hb_039075_010 0.1002134672 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
5 Hb_003777_150 0.1109421283 - - PREDICTED: uncharacterized protein LOC105640938 isoform X1 [Jatropha curcas]
6 Hb_000270_050 0.1125934948 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase FEI 2 [Jatropha curcas]
7 Hb_030360_010 0.1174462983 - - -
8 Hb_089040_010 0.1220530272 - - Glycosyl hydrolase family protein isoform 1 [Theobroma cacao]
9 Hb_004453_060 0.1245204489 - - PREDICTED: zinc finger Ran-binding domain-containing protein 2 [Jatropha curcas]
10 Hb_107658_010 0.1266989438 - - PREDICTED: BTB/POZ domain-containing protein At1g03010-like isoform X2 [Jatropha curcas]
11 Hb_002970_030 0.1277488191 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004112_080 0.128258509 - - PREDICTED: leucine-rich repeat receptor-like tyrosine-protein kinase At2g41820 [Jatropha curcas]
13 Hb_000333_140 0.1283285301 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
14 Hb_005211_170 0.128543552 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 1 [Jatropha curcas]
15 Hb_003427_070 0.1361851675 - - hypothetical protein POPTR_0067s00310g [Populus trichocarpa]
16 Hb_002307_150 0.1368517573 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA4-like [Jatropha curcas]
17 Hb_084304_010 0.1376196131 - - PREDICTED: probable auxin efflux carrier component 1c isoform X2 [Jatropha curcas]
18 Hb_016911_010 0.1379207578 - - hypothetical protein POPTR_0010s15010g [Populus trichocarpa]
19 Hb_004319_010 0.1379329121 - - PREDICTED: peroxidase 63-like [Jatropha curcas]
20 Hb_009062_020 0.1384684739 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP20-2, chloroplastic [Cucumis melo]

Gene co-expression network

sample Hb_004732_070 Hb_004732_070 Hb_000310_040 Hb_000310_040 Hb_004732_070--Hb_000310_040 Hb_000190_160 Hb_000190_160 Hb_004732_070--Hb_000190_160 Hb_039075_010 Hb_039075_010 Hb_004732_070--Hb_039075_010 Hb_003777_150 Hb_003777_150 Hb_004732_070--Hb_003777_150 Hb_000270_050 Hb_000270_050 Hb_004732_070--Hb_000270_050 Hb_030360_010 Hb_030360_010 Hb_004732_070--Hb_030360_010 Hb_000310_040--Hb_039075_010 Hb_000333_140 Hb_000333_140 Hb_000310_040--Hb_000333_140 Hb_005211_170 Hb_005211_170 Hb_000310_040--Hb_005211_170 Hb_000310_040--Hb_030360_010 Hb_000861_060 Hb_000861_060 Hb_000310_040--Hb_000861_060 Hb_089040_010 Hb_089040_010 Hb_000190_160--Hb_089040_010 Hb_004112_080 Hb_004112_080 Hb_000190_160--Hb_004112_080 Hb_000190_160--Hb_039075_010 Hb_000190_160--Hb_000310_040 Hb_000190_160--Hb_030360_010 Hb_039075_010--Hb_030360_010 Hb_016911_010 Hb_016911_010 Hb_039075_010--Hb_016911_010 Hb_039075_010--Hb_004112_080 Hb_039075_010--Hb_000333_140 Hb_011628_010 Hb_011628_010 Hb_039075_010--Hb_011628_010 Hb_084304_010 Hb_084304_010 Hb_003777_150--Hb_084304_010 Hb_003427_070 Hb_003427_070 Hb_003777_150--Hb_003427_070 Hb_000628_060 Hb_000628_060 Hb_003777_150--Hb_000628_060 Hb_004474_020 Hb_004474_020 Hb_003777_150--Hb_004474_020 Hb_004970_100 Hb_004970_100 Hb_003777_150--Hb_004970_100 Hb_069384_010 Hb_069384_010 Hb_003777_150--Hb_069384_010 Hb_000289_020 Hb_000289_020 Hb_000270_050--Hb_000289_020 Hb_001205_290 Hb_001205_290 Hb_000270_050--Hb_001205_290 Hb_003489_010 Hb_003489_010 Hb_000270_050--Hb_003489_010 Hb_002307_150 Hb_002307_150 Hb_000270_050--Hb_002307_150 Hb_000270_050--Hb_005211_170 Hb_030360_010--Hb_004112_080 Hb_000739_190 Hb_000739_190 Hb_030360_010--Hb_000739_190 Hb_030360_010--Hb_011628_010 Hb_004705_060 Hb_004705_060 Hb_030360_010--Hb_004705_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.07494 19.5126 70.9795 183.472 1.7614 0.722907
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0271056 0.0507513 5.02642 6.55332

CAGE analysis