Hb_004734_060

Information

Type transcription factor
Description TF Family: WRKY
Location Contig4734: 93521-102711
Sequence    

Annotation

kegg
ID pop:POPTR_0018s11630g
description POPTRDRAFT_578746; WRKY family transcription factor family protein
nr
ID XP_012071501.1
description PREDICTED: probable WRKY transcription factor 32 isoform X1 [Jatropha curcas]
swissprot
ID P59583
description Probable WRKY transcription factor 32 OS=Arabidopsis thaliana GN=WRKY32 PE=2 SV=1
trembl
ID M9TNQ2
description Uncharacterized protein OS=Jatropha curcas GN=WRKY02 PE=4 SV=1
Gene Ontology
ID GO:0003700
description probable wrky transcription factor 32 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44439: 93621-102512
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004734_060 0.0 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 32 isoform X1 [Jatropha curcas]
2 Hb_033152_080 0.0452658442 - - RNA-binding protein Nova-1, putative [Ricinus communis]
3 Hb_000803_190 0.0572501254 - - PREDICTED: THUMP domain-containing protein 1 isoform X1 [Jatropha curcas]
4 Hb_000953_010 0.0609817791 - - hypothetical protein CISIN_1g0425012mg, partial [Citrus sinensis]
5 Hb_000209_020 0.0693272982 - - PREDICTED: uncharacterized protein At4g26450 isoform X3 [Jatropha curcas]
6 Hb_001516_100 0.0702143922 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
7 Hb_000184_130 0.0737616251 - - PREDICTED: uncharacterized protein LOC105641544 isoform X1 [Jatropha curcas]
8 Hb_001437_180 0.0749152606 desease resistance Gene Name: CDC48_N PREDICTED: cell division cycle protein 48 homolog [Jatropha curcas]
9 Hb_005324_010 0.0784557009 - - Chaperone protein dnaJ, putative [Ricinus communis]
10 Hb_001584_170 0.0809360837 - - neutral/alkaline invertase [Manihot esculenta]
11 Hb_008085_010 0.0840784634 - - PREDICTED: pentatricopeptide repeat-containing protein At4g26680, mitochondrial [Jatropha curcas]
12 Hb_000173_400 0.084098861 - - PREDICTED: pentatricopeptide repeat-containing protein At5g18950 [Jatropha curcas]
13 Hb_000059_210 0.0841662875 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001771_130 0.0860566258 - - PREDICTED: pentatricopeptide repeat-containing protein At2g27610 [Jatropha curcas]
15 Hb_000915_050 0.0871661137 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000865_080 0.087840439 - - arsenite-resistance protein, putative [Ricinus communis]
17 Hb_005306_130 0.0884725046 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
18 Hb_005307_030 0.088764493 - - hypothetical protein POPTR_0006s04640g [Populus trichocarpa]
19 Hb_001141_330 0.0891621685 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14850 [Jatropha curcas]
20 Hb_004970_150 0.0894927213 - - PREDICTED: uncharacterized protein LOC105633636 [Jatropha curcas]

Gene co-expression network

sample Hb_004734_060 Hb_004734_060 Hb_033152_080 Hb_033152_080 Hb_004734_060--Hb_033152_080 Hb_000803_190 Hb_000803_190 Hb_004734_060--Hb_000803_190 Hb_000953_010 Hb_000953_010 Hb_004734_060--Hb_000953_010 Hb_000209_020 Hb_000209_020 Hb_004734_060--Hb_000209_020 Hb_001516_100 Hb_001516_100 Hb_004734_060--Hb_001516_100 Hb_000184_130 Hb_000184_130 Hb_004734_060--Hb_000184_130 Hb_033152_080--Hb_000803_190 Hb_033152_080--Hb_000953_010 Hb_000808_180 Hb_000808_180 Hb_033152_080--Hb_000808_180 Hb_033152_080--Hb_000184_130 Hb_033152_080--Hb_000209_020 Hb_000803_190--Hb_000953_010 Hb_001797_050 Hb_001797_050 Hb_000803_190--Hb_001797_050 Hb_005188_050 Hb_005188_050 Hb_000803_190--Hb_005188_050 Hb_000207_390 Hb_000207_390 Hb_000803_190--Hb_000207_390 Hb_000836_360 Hb_000836_360 Hb_000953_010--Hb_000836_360 Hb_000173_400 Hb_000173_400 Hb_000953_010--Hb_000173_400 Hb_156850_030 Hb_156850_030 Hb_000953_010--Hb_156850_030 Hb_000209_020--Hb_000184_130 Hb_005324_010 Hb_005324_010 Hb_000209_020--Hb_005324_010 Hb_000139_240 Hb_000139_240 Hb_000209_020--Hb_000139_240 Hb_001943_010 Hb_001943_010 Hb_000209_020--Hb_001943_010 Hb_001516_100--Hb_000953_010 Hb_001516_100--Hb_000836_360 Hb_001516_100--Hb_000808_180 Hb_000977_070 Hb_000977_070 Hb_001516_100--Hb_000977_070 Hb_001516_100--Hb_033152_080 Hb_000370_030 Hb_000370_030 Hb_000184_130--Hb_000370_030 Hb_000915_050 Hb_000915_050 Hb_000184_130--Hb_000915_050 Hb_004204_020 Hb_004204_020 Hb_000184_130--Hb_004204_020 Hb_003362_040 Hb_003362_040 Hb_000184_130--Hb_003362_040 Hb_002039_010 Hb_002039_010 Hb_000184_130--Hb_002039_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
83.9116 73.1875 15.3357 21.6439 73.918 110.812
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
49.8217 46.3337 65.2398 47.7798 17.5507

CAGE analysis