Hb_004735_010

Information

Type -
Description -
Location Contig4735: 21000-28504
Sequence    

Annotation

kegg
ID vvi:100262845
description protein arginine N-methyltransferase PRMT10
nr
ID XP_002285026.1
description PREDICTED: protein arginine N-methyltransferase PRMT10 [Vitis vinifera]
swissprot
ID Q9MAT5
description Protein arginine N-methyltransferase PRMT10 OS=Arabidopsis thaliana GN=PRMT10 PE=1 SV=1
trembl
ID A0A067K7Z8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13286 PE=4 SV=1
Gene Ontology
ID GO:0005829
description protein arginine n-methyltransferase prmt10

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44440: 20983-26738 , PASA_asmbl_44441: 20983-26738 , PASA_asmbl_44442: 20983-28581 , PASA_asmbl_44443: 23324-23546
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004735_010 0.0 - - PREDICTED: protein arginine N-methyltransferase PRMT10 [Vitis vinifera]
2 Hb_000700_090 0.0805226768 - - protein with unknown function [Ricinus communis]
3 Hb_001902_050 0.0930830304 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105648450 [Jatropha curcas]
4 Hb_006602_020 0.0940986657 - - unknown [Medicago truncatula]
5 Hb_006602_010 0.0980005212 - - PREDICTED: tobamovirus multiplication protein 3 [Jatropha curcas]
6 Hb_000671_100 0.1094584787 - - hypothetical protein POPTR_0017s06410g [Populus trichocarpa]
7 Hb_000442_160 0.1101652671 - - alpha-soluble nsf attachment protein, putative [Ricinus communis]
8 Hb_020902_010 0.1102214838 - - PREDICTED: uncharacterized protein LOC104595551 [Nelumbo nucifera]
9 Hb_000878_130 0.1102368744 - - conserved hypothetical protein [Ricinus communis]
10 Hb_005539_290 0.1103323342 - - unknown [Lotus japonicus]
11 Hb_001476_100 0.1104124228 - - conserved hypothetical protein [Ricinus communis]
12 Hb_035524_030 0.1125579446 - - conserved hypothetical protein [Ricinus communis]
13 Hb_006198_050 0.1164828916 - - protein with unknown function [Ricinus communis]
14 Hb_002154_050 0.1180473765 - - RNA binding protein, putative [Ricinus communis]
15 Hb_003638_140 0.1181326355 - - protein binding protein, putative [Ricinus communis]
16 Hb_004072_010 0.1233705549 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X1 [Jatropha curcas]
17 Hb_010261_020 0.1234794009 - - hypothetical protein JCGZ_17258 [Jatropha curcas]
18 Hb_026048_100 0.1244662005 - - PREDICTED: putative cell division cycle ATPase [Jatropha curcas]
19 Hb_006816_360 0.1255033715 - - PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 3 [Jatropha curcas]
20 Hb_019613_020 0.1261239684 - - phospholipase C, putative [Ricinus communis]

Gene co-expression network

sample Hb_004735_010 Hb_004735_010 Hb_000700_090 Hb_000700_090 Hb_004735_010--Hb_000700_090 Hb_001902_050 Hb_001902_050 Hb_004735_010--Hb_001902_050 Hb_006602_020 Hb_006602_020 Hb_004735_010--Hb_006602_020 Hb_006602_010 Hb_006602_010 Hb_004735_010--Hb_006602_010 Hb_000671_100 Hb_000671_100 Hb_004735_010--Hb_000671_100 Hb_000442_160 Hb_000442_160 Hb_004735_010--Hb_000442_160 Hb_000700_090--Hb_006602_020 Hb_000700_090--Hb_001902_050 Hb_000152_140 Hb_000152_140 Hb_000700_090--Hb_000152_140 Hb_098709_010 Hb_098709_010 Hb_000700_090--Hb_098709_010 Hb_000696_110 Hb_000696_110 Hb_000700_090--Hb_000696_110 Hb_005539_290 Hb_005539_290 Hb_001902_050--Hb_005539_290 Hb_001902_050--Hb_006602_020 Hb_000365_360 Hb_000365_360 Hb_001902_050--Hb_000365_360 Hb_026048_100 Hb_026048_100 Hb_001902_050--Hb_026048_100 Hb_006602_020--Hb_006602_010 Hb_006602_020--Hb_005539_290 Hb_000387_080 Hb_000387_080 Hb_006602_020--Hb_000387_080 Hb_005779_100 Hb_005779_100 Hb_006602_020--Hb_005779_100 Hb_002154_050 Hb_002154_050 Hb_006602_010--Hb_002154_050 Hb_006602_010--Hb_005779_100 Hb_006602_010--Hb_000700_090 Hb_006602_010--Hb_005539_290 Hb_024714_030 Hb_024714_030 Hb_000671_100--Hb_024714_030 Hb_002014_080 Hb_002014_080 Hb_000671_100--Hb_002014_080 Hb_010298_010 Hb_010298_010 Hb_000671_100--Hb_010298_010 Hb_035524_030 Hb_035524_030 Hb_000671_100--Hb_035524_030 Hb_014568_030 Hb_014568_030 Hb_000671_100--Hb_014568_030 Hb_009558_020 Hb_009558_020 Hb_000671_100--Hb_009558_020 Hb_006447_010 Hb_006447_010 Hb_000442_160--Hb_006447_010 Hb_000442_160--Hb_000365_360 Hb_000749_150 Hb_000749_150 Hb_000442_160--Hb_000749_150 Hb_133271_020 Hb_133271_020 Hb_000442_160--Hb_133271_020 Hb_001246_100 Hb_001246_100 Hb_000442_160--Hb_001246_100 Hb_010608_010 Hb_010608_010 Hb_000442_160--Hb_010608_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
216.32 40.5142 15.3038 33.1777 146.9 460.588
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
185.955 142.348 254.805 71.5655 17.3021

CAGE analysis