Hb_004735_040

Information

Type -
Description -
Location Contig4735: 76847-80334
Sequence    

Annotation

kegg
ID pvu:PHAVU_009G095600g
description hypothetical protein
nr
ID XP_012078716.1
description PREDICTED: GTP-binding nuclear protein Ran1A-like [Jatropha curcas]
swissprot
ID Q8H156
description GTP-binding nuclear protein Ran-3 OS=Arabidopsis thaliana GN=RAN3 PE=1 SV=2
trembl
ID A0A067K8D0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13282 PE=4 SV=1
Gene Ontology
ID GO:0005634
description gtp-binding nuclear protein ran-3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44454: 76606-80201 , PASA_asmbl_44455: 78446-78744
cDNA
(Sanger)
(ID:Location)		 004_J13.ab1: 77069-80201 , 006_K23.ab1: 77073-80125 , 036_N09.ab1: 77074-80125 , 041_N24.ab1: 77441-80125 , 045_K07.ab1: 77009-80127 , 052_B10.ab1: 77104-80123

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004735_040 0.0 - - PREDICTED: GTP-binding nuclear protein Ran1A-like [Jatropha curcas]
2 Hb_002609_020 0.0569930299 - - PREDICTED: phosphatidylinositol N-acetylglucosaminyltransferase subunit P-like [Jatropha curcas]
3 Hb_001821_010 0.064439097 - - PREDICTED: uncharacterized protein C9orf78 [Jatropha curcas]
4 Hb_001105_030 0.0691363348 - - PREDICTED: probable caffeoyl-CoA O-methyltransferase At4g26220 [Jatropha curcas]
5 Hb_001489_060 0.0706540765 - - PREDICTED: uncharacterized protein LOC105649778 isoform X2 [Jatropha curcas]
6 Hb_001195_280 0.0723890026 - - PREDICTED: uncharacterized protein LOC103928873 isoform X1 [Pyrus x bretschneideri]
7 Hb_000302_010 0.0744968743 - - Vesicle-associated membrane protein, putative [Ricinus communis]
8 Hb_007416_030 0.0760497955 - - PREDICTED: transcription initiation factor TFIID subunit 10 [Jatropha curcas]
9 Hb_012725_050 0.0767690732 transcription factor TF Family: SET set domain protein, putative [Ricinus communis]
10 Hb_063716_050 0.0781021213 - - PREDICTED: uncharacterized protein LOC105634866 [Jatropha curcas]
11 Hb_002006_020 0.0798733614 - - PREDICTED: uncharacterized protein LOC105650638 [Jatropha curcas]
12 Hb_153112_020 0.0805960312 - - PREDICTED: mediator of RNA polymerase II transcription subunit 22b-like [Jatropha curcas]
13 Hb_000059_370 0.0842607891 - - PREDICTED: U6 snRNA phosphodiesterase [Jatropha curcas]
14 Hb_002226_070 0.0848901197 - - PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Jatropha curcas]
15 Hb_002477_070 0.0852605039 - - Charged multivesicular body protein 2a, putative [Ricinus communis]
16 Hb_000926_250 0.0854208136 - - hypothetical protein POPTR_0011s08930g [Populus trichocarpa]
17 Hb_002686_020 0.0854842383 - - galactose-1-phosphate uridylyltransferase, putative [Ricinus communis]
18 Hb_003050_080 0.0860518177 - - 40S ribosomal protein S14, putative [Ricinus communis]
19 Hb_000056_200 0.086799599 - - 40S ribosomal S9-2 -like protein [Gossypium arboreum]
20 Hb_000580_090 0.0874444957 - - PREDICTED: tRNA 2'-phosphotransferase 1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004735_040 Hb_004735_040 Hb_002609_020 Hb_002609_020 Hb_004735_040--Hb_002609_020 Hb_001821_010 Hb_001821_010 Hb_004735_040--Hb_001821_010 Hb_001105_030 Hb_001105_030 Hb_004735_040--Hb_001105_030 Hb_001489_060 Hb_001489_060 Hb_004735_040--Hb_001489_060 Hb_001195_280 Hb_001195_280 Hb_004735_040--Hb_001195_280 Hb_000302_010 Hb_000302_010 Hb_004735_040--Hb_000302_010 Hb_002609_020--Hb_001821_010 Hb_009838_080 Hb_009838_080 Hb_002609_020--Hb_009838_080 Hb_000056_200 Hb_000056_200 Hb_002609_020--Hb_000056_200 Hb_000243_030 Hb_000243_030 Hb_002609_020--Hb_000243_030 Hb_002226_070 Hb_002226_070 Hb_002609_020--Hb_002226_070 Hb_000815_320 Hb_000815_320 Hb_001821_010--Hb_000815_320 Hb_001821_010--Hb_001105_030 Hb_001821_010--Hb_000056_200 Hb_012725_050 Hb_012725_050 Hb_001821_010--Hb_012725_050 Hb_000059_370 Hb_000059_370 Hb_001105_030--Hb_000059_370 Hb_001105_030--Hb_012725_050 Hb_001157_020 Hb_001157_020 Hb_001105_030--Hb_001157_020 Hb_000580_090 Hb_000580_090 Hb_001105_030--Hb_000580_090 Hb_001105_030--Hb_000815_320 Hb_063716_050 Hb_063716_050 Hb_001489_060--Hb_063716_050 Hb_003050_080 Hb_003050_080 Hb_001489_060--Hb_003050_080 Hb_001489_060--Hb_002226_070 Hb_002006_020 Hb_002006_020 Hb_001489_060--Hb_002006_020 Hb_001489_060--Hb_001821_010 Hb_001489_060--Hb_000056_200 Hb_001195_280--Hb_001105_030 Hb_001195_280--Hb_001157_020 Hb_001195_280--Hb_002609_020 Hb_001195_280--Hb_000059_370 Hb_001195_280--Hb_012725_050 Hb_000302_010--Hb_001489_060 Hb_001481_170 Hb_001481_170 Hb_000302_010--Hb_001481_170 Hb_001564_130 Hb_001564_130 Hb_000302_010--Hb_001564_130 Hb_000302_010--Hb_000580_090 Hb_007477_070 Hb_007477_070 Hb_000302_010--Hb_007477_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
125.03 73.7054 131.238 87.8722 222.358 189.259
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
246.403 318.889 200.339 78.5661 83.9347

CAGE analysis