Hb_004738_020

Information

Type -
Description -
Location Contig4738: 27687-30093
Sequence    

Annotation

kegg
ID rcu:RCOM_0536430
description hypothetical protein
nr
ID XP_002521586.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9S7R3
description Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Arabidopsis thaliana GN=LSH10 PE=1 SV=1
trembl
ID B9S6G7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0536430 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44460: 27611-30171
cDNA
(Sanger)
(ID:Location)		 030_N16.ab1: 27679-29859 , 049_K12.ab1: 27611-28145 , 051_O05.ab1: 27679-29877

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004738_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001150_040 0.1311828391 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent)-like [Solanum lycopersicum]
3 Hb_004225_180 0.154359442 - - bel1 homeotic protein, putative [Ricinus communis]
4 Hb_000640_300 0.1814170026 transcription factor TF Family: WRKY WRKY1 [Hevea brasiliensis]
5 Hb_000703_240 0.1815699002 - - -
6 Hb_155123_010 0.1877359013 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
7 Hb_001959_040 0.1940646454 - - PREDICTED: beta-amylase 1, chloroplastic [Jatropha curcas]
8 Hb_028872_060 0.1961715555 - - PREDICTED: ankyrin-3-like [Jatropha curcas]
9 Hb_143629_040 0.1977241451 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000003_050 0.1999263478 - - Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [Theobroma cacao]
11 Hb_026698_010 0.2022917212 - - 2,4-dienoyl-CoA reductase, putative [Ricinus communis]
12 Hb_000203_180 0.2076800797 - - PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 [Jatropha curcas]
13 Hb_000703_250 0.2135452625 - - PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Jatropha curcas]
14 Hb_000390_150 0.214419437 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105632469 [Jatropha curcas]
15 Hb_000300_620 0.216570322 - - PREDICTED: eukaryotic translation initiation factor NCBP [Jatropha curcas]
16 Hb_004607_150 0.2177706336 - - PREDICTED: serine/threonine-protein kinase UCNL [Jatropha curcas]
17 Hb_010407_070 0.2179947831 - - hypothetical protein POPTR_0008s16750g [Populus trichocarpa]
18 Hb_001619_080 0.2182758723 - - conserved hypothetical protein [Ricinus communis]
19 Hb_055259_010 0.2187503297 - - -
20 Hb_000436_010 0.2196842074 - - PREDICTED: probable polyamine transporter At1g31830 isoform X1 [Eucalyptus grandis]

Gene co-expression network

sample Hb_004738_020 Hb_004738_020 Hb_001150_040 Hb_001150_040 Hb_004738_020--Hb_001150_040 Hb_004225_180 Hb_004225_180 Hb_004738_020--Hb_004225_180 Hb_000640_300 Hb_000640_300 Hb_004738_020--Hb_000640_300 Hb_000703_240 Hb_000703_240 Hb_004738_020--Hb_000703_240 Hb_155123_010 Hb_155123_010 Hb_004738_020--Hb_155123_010 Hb_001959_040 Hb_001959_040 Hb_004738_020--Hb_001959_040 Hb_000203_180 Hb_000203_180 Hb_001150_040--Hb_000203_180 Hb_028872_060 Hb_028872_060 Hb_001150_040--Hb_028872_060 Hb_001150_040--Hb_004225_180 Hb_001150_040--Hb_000640_300 Hb_012052_060 Hb_012052_060 Hb_001150_040--Hb_012052_060 Hb_026698_010 Hb_026698_010 Hb_004225_180--Hb_026698_010 Hb_010407_070 Hb_010407_070 Hb_004225_180--Hb_010407_070 Hb_006189_010 Hb_006189_010 Hb_004225_180--Hb_006189_010 Hb_011472_040 Hb_011472_040 Hb_004225_180--Hb_011472_040 Hb_007849_040 Hb_007849_040 Hb_004225_180--Hb_007849_040 Hb_003978_010 Hb_003978_010 Hb_004225_180--Hb_003978_010 Hb_000589_400 Hb_000589_400 Hb_000640_300--Hb_000589_400 Hb_000243_140 Hb_000243_140 Hb_000640_300--Hb_000243_140 Hb_007451_020 Hb_007451_020 Hb_000640_300--Hb_007451_020 Hb_000640_300--Hb_028872_060 Hb_004230_040 Hb_004230_040 Hb_000640_300--Hb_004230_040 Hb_000497_180 Hb_000497_180 Hb_000703_240--Hb_000497_180 Hb_000703_240--Hb_026698_010 Hb_000050_090 Hb_000050_090 Hb_000703_240--Hb_000050_090 Hb_000703_240--Hb_000640_300 Hb_005702_030 Hb_005702_030 Hb_000703_240--Hb_005702_030 Hb_000703_240--Hb_000589_400 Hb_008376_010 Hb_008376_010 Hb_155123_010--Hb_008376_010 Hb_018133_120 Hb_018133_120 Hb_155123_010--Hb_018133_120 Hb_155123_010--Hb_028872_060 Hb_001856_010 Hb_001856_010 Hb_155123_010--Hb_001856_010 Hb_004116_200 Hb_004116_200 Hb_155123_010--Hb_004116_200 Hb_000005_330 Hb_000005_330 Hb_001959_040--Hb_000005_330 Hb_000261_440 Hb_000261_440 Hb_001959_040--Hb_000261_440 Hb_001587_190 Hb_001587_190 Hb_001959_040--Hb_001587_190 Hb_001959_040--Hb_004225_180 Hb_022092_120 Hb_022092_120 Hb_001959_040--Hb_022092_120 Hb_001047_120 Hb_001047_120 Hb_001959_040--Hb_001047_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
106.048 88.4059 0.182236 5.77835 58.4586 58.8427
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
167.541 51.9258 126.946 117.116 0.104597

CAGE analysis