Hb_004738_030

Information

Type -
Description -
Location Contig4738: 52167-59240
Sequence    

Annotation

kegg
ID csv:101204636
description inactive protein kinase SELMODRAFT_444075-like
nr
ID KHG20383.1
description Inactive protein kinase [Gossypium arboreum]
swissprot
ID P0DH62
description Inactive protein kinase SELMODRAFT_444075 OS=Selaginella moellendorffii GN=SELMODRAFT_444075 PE=2 SV=1
trembl
ID A0A0B0P0Z4
description Inactive protein kinase OS=Gossypium arboreum GN=F383_24280 PE=4 SV=1
Gene Ontology
ID GO:0005886
description serine threonine-protein kinase cdl1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44461: 52989-53562 , PASA_asmbl_44462: 52393-59126
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004738_030 0.0 - - Inactive protein kinase [Gossypium arboreum]
2 Hb_002311_190 0.1022021125 - - PREDICTED: uncharacterized protein LOC105643493 [Jatropha curcas]
3 Hb_009222_070 0.131532749 - - PREDICTED: xylosyltransferase 2 [Jatropha curcas]
4 Hb_001349_030 0.1333569467 - - PREDICTED: uncharacterized protein LOC105641975 isoform X1 [Jatropha curcas]
5 Hb_002053_050 0.1343124086 - - Kinesin heavy chain, putative [Ricinus communis]
6 Hb_000503_020 0.1404570433 - - PREDICTED: calcium-dependent protein kinase 13 [Jatropha curcas]
7 Hb_000665_190 0.1453067517 - - conserved hypothetical protein [Ricinus communis]
8 Hb_005656_070 0.1462032887 - - PREDICTED: cryptochrome DASH, chloroplastic/mitochondrial [Jatropha curcas]
9 Hb_000300_090 0.1507743517 - - catalytic, putative [Ricinus communis]
10 Hb_006022_010 0.1535747672 - - PREDICTED: uncharacterized protein LOC105628883 [Jatropha curcas]
11 Hb_164010_050 0.1548169451 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH1 [Jatropha curcas]
12 Hb_000069_570 0.1557277836 - - PREDICTED: uncharacterized protein At5g05190-like isoform X1 [Jatropha curcas]
13 Hb_001623_110 0.1571602669 - - PREDICTED: xylosyltransferase 1 [Jatropha curcas]
14 Hb_012762_060 0.1576515249 - - Vitellogenic carboxypeptidase, putative [Ricinus communis]
15 Hb_029584_040 0.1586474336 - - hypothetical protein Csa_1G586790 [Cucumis sativus]
16 Hb_000193_300 0.159090598 - - PREDICTED: putative glycosyltransferase 5 [Jatropha curcas]
17 Hb_116420_040 0.1595409797 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000844_030 0.1606018024 - - ent-kaurene oxidase, putative [Ricinus communis]
19 Hb_000922_060 0.1608606546 - - kinesin light chain, putative [Ricinus communis]
20 Hb_000805_210 0.1610443266 - - PREDICTED: oxysterol-binding protein-related protein 3C-like [Jatropha curcas]

Gene co-expression network

sample Hb_004738_030 Hb_004738_030 Hb_002311_190 Hb_002311_190 Hb_004738_030--Hb_002311_190 Hb_009222_070 Hb_009222_070 Hb_004738_030--Hb_009222_070 Hb_001349_030 Hb_001349_030 Hb_004738_030--Hb_001349_030 Hb_002053_050 Hb_002053_050 Hb_004738_030--Hb_002053_050 Hb_000503_020 Hb_000503_020 Hb_004738_030--Hb_000503_020 Hb_000665_190 Hb_000665_190 Hb_004738_030--Hb_000665_190 Hb_006022_010 Hb_006022_010 Hb_002311_190--Hb_006022_010 Hb_012262_040 Hb_012262_040 Hb_002311_190--Hb_012262_040 Hb_002311_190--Hb_000503_020 Hb_001623_110 Hb_001623_110 Hb_002311_190--Hb_001623_110 Hb_002311_190--Hb_001349_030 Hb_000805_210 Hb_000805_210 Hb_009222_070--Hb_000805_210 Hb_009393_200 Hb_009393_200 Hb_009222_070--Hb_009393_200 Hb_083628_010 Hb_083628_010 Hb_009222_070--Hb_083628_010 Hb_002615_070 Hb_002615_070 Hb_009222_070--Hb_002615_070 Hb_009222_070--Hb_001623_110 Hb_009247_010 Hb_009247_010 Hb_009222_070--Hb_009247_010 Hb_000664_110 Hb_000664_110 Hb_001349_030--Hb_000664_110 Hb_007800_020 Hb_007800_020 Hb_001349_030--Hb_007800_020 Hb_000637_140 Hb_000637_140 Hb_001349_030--Hb_000637_140 Hb_002400_320 Hb_002400_320 Hb_001349_030--Hb_002400_320 Hb_000588_080 Hb_000588_080 Hb_001349_030--Hb_000588_080 Hb_005062_060 Hb_005062_060 Hb_002053_050--Hb_005062_060 Hb_000107_250 Hb_000107_250 Hb_002053_050--Hb_000107_250 Hb_005656_070 Hb_005656_070 Hb_002053_050--Hb_005656_070 Hb_022693_130 Hb_022693_130 Hb_002053_050--Hb_022693_130 Hb_000815_230 Hb_000815_230 Hb_002053_050--Hb_000815_230 Hb_073973_120 Hb_073973_120 Hb_002053_050--Hb_073973_120 Hb_000054_040 Hb_000054_040 Hb_000503_020--Hb_000054_040 Hb_005062_110 Hb_005062_110 Hb_000503_020--Hb_005062_110 Hb_000320_290 Hb_000320_290 Hb_000503_020--Hb_000320_290 Hb_000085_260 Hb_000085_260 Hb_000503_020--Hb_000085_260 Hb_006120_050 Hb_006120_050 Hb_000503_020--Hb_006120_050 Hb_001246_130 Hb_001246_130 Hb_000503_020--Hb_001246_130 Hb_001049_150 Hb_001049_150 Hb_000665_190--Hb_001049_150 Hb_003994_300 Hb_003994_300 Hb_000665_190--Hb_003994_300 Hb_027445_030 Hb_027445_030 Hb_000665_190--Hb_027445_030 Hb_003746_010 Hb_003746_010 Hb_000665_190--Hb_003746_010 Hb_003540_080 Hb_003540_080 Hb_000665_190--Hb_003540_080 Hb_011926_040 Hb_011926_040 Hb_000665_190--Hb_011926_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.02262 3.51955 5.47849 9.31805 2.91493 4.12765
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.942816 1.18667 1.05174 0.724139 4.31195

CAGE analysis