Hb_004738_040

Information

Type -
Description -
Location Contig4738: 61544-79859
Sequence    

Annotation

kegg
ID rcu:RCOM_0614160
description protein kinase, putative (EC:2.7.10.2)
nr
ID XP_011008165.1
description PREDICTED: serine/threonine-protein kinase EDR1-like isoform X2 [Populus euphratica]
swissprot
ID Q05609
description Serine/threonine-protein kinase CTR1 OS=Arabidopsis thaliana GN=CTR1 PE=1 SV=1
trembl
ID B9SRD1
description Protein kinase, putative OS=Ricinus communis GN=RCOM_0614160 PE=3 SV=1
Gene Ontology
ID GO:0005622
description serine threonine-protein kinase edr1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44464: 71960-80045
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004738_040 0.0 - - PREDICTED: serine/threonine-protein kinase EDR1-like isoform X2 [Populus euphratica]
2 Hb_002687_110 0.0628531033 - - PREDICTED: uncharacterized WD repeat-containing protein C343.04c isoform X1 [Jatropha curcas]
3 Hb_000510_320 0.0697277738 - - PREDICTED: uncharacterized protein LOC105649907 [Jatropha curcas]
4 Hb_001277_330 0.0797931355 - - PREDICTED: transmembrane emp24 domain-containing protein p24beta3 [Jatropha curcas]
5 Hb_005625_020 0.08404828 transcription factor TF Family: bZIP PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X1 [Jatropha curcas]
6 Hb_000409_020 0.08417546 - - PREDICTED: V-type proton ATPase subunit d2 [Jatropha curcas]
7 Hb_000431_010 0.0849683361 - - hypothetical protein POPTR_0016s05340g [Populus trichocarpa]
8 Hb_000080_190 0.085109108 - - -
9 Hb_003943_040 0.0856136621 - - DNA binding protein, putative [Ricinus communis]
10 Hb_008695_210 0.0866629873 - - PREDICTED: serine hydroxymethyltransferase 7 [Jatropha curcas]
11 Hb_002006_090 0.0882080529 - - PREDICTED: pentatricopeptide repeat-containing protein At5g50990 [Jatropha curcas]
12 Hb_000207_250 0.0909170648 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein, putative [Ricinus communis]
13 Hb_002005_020 0.0912505119 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000907_080 0.0918883192 - - PREDICTED: uncharacterized protein LOC105640819 [Jatropha curcas]
15 Hb_000898_040 0.0920293426 - - ankyrin repeat-containing protein, putative [Ricinus communis]
16 Hb_031862_110 0.0923906652 - - calcium-dependent protein kinase [Hevea brasiliensis]
17 Hb_006711_060 0.0927624293 - - Tubulin beta-1 chain [Morus notabilis]
18 Hb_001051_100 0.0930529946 transcription factor TF Family: ARF Auxin response factor, putative [Ricinus communis]
19 Hb_000138_110 0.0960383616 - - PREDICTED: probable protein phosphatase 2C 68 [Jatropha curcas]
20 Hb_002105_040 0.0969208263 - - -

Gene co-expression network

sample Hb_004738_040 Hb_004738_040 Hb_002687_110 Hb_002687_110 Hb_004738_040--Hb_002687_110 Hb_000510_320 Hb_000510_320 Hb_004738_040--Hb_000510_320 Hb_001277_330 Hb_001277_330 Hb_004738_040--Hb_001277_330 Hb_005625_020 Hb_005625_020 Hb_004738_040--Hb_005625_020 Hb_000409_020 Hb_000409_020 Hb_004738_040--Hb_000409_020 Hb_000431_010 Hb_000431_010 Hb_004738_040--Hb_000431_010 Hb_002687_110--Hb_000431_010 Hb_000080_190 Hb_000080_190 Hb_002687_110--Hb_000080_190 Hb_002687_110--Hb_001277_330 Hb_002687_110--Hb_000409_020 Hb_003943_040 Hb_003943_040 Hb_002687_110--Hb_003943_040 Hb_002105_040 Hb_002105_040 Hb_000510_320--Hb_002105_040 Hb_000175_460 Hb_000175_460 Hb_000510_320--Hb_000175_460 Hb_000086_400 Hb_000086_400 Hb_000510_320--Hb_000086_400 Hb_000876_070 Hb_000876_070 Hb_000510_320--Hb_000876_070 Hb_181288_020 Hb_181288_020 Hb_000510_320--Hb_181288_020 Hb_011316_040 Hb_011316_040 Hb_001277_330--Hb_011316_040 Hb_002518_140 Hb_002518_140 Hb_001277_330--Hb_002518_140 Hb_000754_040 Hb_000754_040 Hb_001277_330--Hb_000754_040 Hb_006915_050 Hb_006915_050 Hb_001277_330--Hb_006915_050 Hb_004994_100 Hb_004994_100 Hb_001277_330--Hb_004994_100 Hb_005625_020--Hb_000080_190 Hb_005625_020--Hb_002687_110 Hb_002769_050 Hb_002769_050 Hb_005625_020--Hb_002769_050 Hb_000898_040 Hb_000898_040 Hb_005625_020--Hb_000898_040 Hb_154648_010 Hb_154648_010 Hb_005625_020--Hb_154648_010 Hb_003206_070 Hb_003206_070 Hb_000409_020--Hb_003206_070 Hb_000409_020--Hb_000898_040 Hb_004109_090 Hb_004109_090 Hb_000409_020--Hb_004109_090 Hb_005663_060 Hb_005663_060 Hb_000409_020--Hb_005663_060 Hb_002016_110 Hb_002016_110 Hb_000409_020--Hb_002016_110 Hb_031862_110 Hb_031862_110 Hb_000431_010--Hb_031862_110 Hb_009486_130 Hb_009486_130 Hb_000431_010--Hb_009486_130 Hb_008300_010 Hb_008300_010 Hb_000431_010--Hb_008300_010 Hb_000431_010--Hb_001277_330 Hb_001140_060 Hb_001140_060 Hb_000431_010--Hb_001140_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.6021 16.4705 15.5882 27.9506 36.925 37.1011
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
42.8791 45.5288 88.7854 19.4888 17.2405

CAGE analysis