Hb_004738_050

Information

Type -
Description -
Location Contig4738: 80241-82363
Sequence    

Annotation

kegg
ID rcu:RCOM_0614170
description F-box/leucine rich repeat protein, putative
nr
ID XP_002528551.1
description F-box/leucine rich repeat protein, putative [Ricinus communis]
swissprot
ID I1SSI5
description F-box/LRR-repeat MAX2 homolog A OS=Petunia hybrida GN=MAX2A PE=1 SV=1
trembl
ID B9SRD2
description F-box/leucine rich repeat protein, putative OS=Ricinus communis GN=RCOM_0614170 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004738_050 0.0 - - F-box/leucine rich repeat protein, putative [Ricinus communis]
2 Hb_007348_040 0.2093521809 transcription factor TF Family: PHD hypothetical protein RCOM_1314010 [Ricinus communis]
3 Hb_001846_050 0.2299378471 - - -
4 Hb_000445_080 0.2368028997 transcription factor TF Family: MIKC PREDICTED: floral homeotic protein PMADS 2 [Jatropha curcas]
5 Hb_094647_010 0.2380957955 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B-like [Jatropha curcas]
6 Hb_007827_020 0.2387762337 - - -
7 Hb_007021_030 0.2477213576 - - conserved hypothetical protein [Ricinus communis]
8 Hb_139859_010 0.2501431117 - - PREDICTED: cell division control protein 48 homolog D-like [Nicotiana sylvestris]
9 Hb_006455_080 0.2507605921 - - PREDICTED: transcription factor GTE6-like isoform X2 [Nelumbo nucifera]
10 Hb_000307_250 0.2511101793 - - PREDICTED: probable nucleoredoxin 2 [Jatropha curcas]
11 Hb_168343_010 0.2560624451 - - sensory transduction histidine kinase, putative [Ricinus communis]
12 Hb_005914_090 0.2603762971 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
13 Hb_012180_040 0.2627055407 - - hypothetical protein VITISV_042517 [Vitis vinifera]
14 Hb_000453_080 0.2630708471 - - nucleic acid binding protein, putative [Ricinus communis]
15 Hb_000365_060 0.2639569188 - - 5'->3' exoribonuclease, putative [Ricinus communis]
16 Hb_006455_090 0.2643041096 - - PREDICTED: transcription factor GTE1-like [Jatropha curcas]
17 Hb_000248_050 0.2668224522 - - PREDICTED: uncharacterized protein LOC105647198 isoform X3 [Jatropha curcas]
18 Hb_135442_010 0.2699974654 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
19 Hb_000236_090 0.2733785164 - - hypothetical protein EUGRSUZ_H00030 [Eucalyptus grandis]
20 Hb_000453_270 0.2737838686 - - PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 [Propithecus coquereli]

Gene co-expression network

sample Hb_004738_050 Hb_004738_050 Hb_007348_040 Hb_007348_040 Hb_004738_050--Hb_007348_040 Hb_001846_050 Hb_001846_050 Hb_004738_050--Hb_001846_050 Hb_000445_080 Hb_000445_080 Hb_004738_050--Hb_000445_080 Hb_094647_010 Hb_094647_010 Hb_004738_050--Hb_094647_010 Hb_007827_020 Hb_007827_020 Hb_004738_050--Hb_007827_020 Hb_007021_030 Hb_007021_030 Hb_004738_050--Hb_007021_030 Hb_000250_080 Hb_000250_080 Hb_007348_040--Hb_000250_080 Hb_000453_080 Hb_000453_080 Hb_007348_040--Hb_000453_080 Hb_000136_150 Hb_000136_150 Hb_007348_040--Hb_000136_150 Hb_001486_120 Hb_001486_120 Hb_007348_040--Hb_001486_120 Hb_006816_410 Hb_006816_410 Hb_007348_040--Hb_006816_410 Hb_081879_030 Hb_081879_030 Hb_007348_040--Hb_081879_030 Hb_168343_010 Hb_168343_010 Hb_001846_050--Hb_168343_010 Hb_015930_010 Hb_015930_010 Hb_001846_050--Hb_015930_010 Hb_001846_050--Hb_000445_080 Hb_006455_080 Hb_006455_080 Hb_001846_050--Hb_006455_080 Hb_001846_050--Hb_094647_010 Hb_000445_080--Hb_168343_010 Hb_000445_080--Hb_006455_080 Hb_000445_080--Hb_094647_010 Hb_000878_130 Hb_000878_130 Hb_000445_080--Hb_000878_130 Hb_006198_050 Hb_006198_050 Hb_000445_080--Hb_006198_050 Hb_000270_500 Hb_000270_500 Hb_094647_010--Hb_000270_500 Hb_009486_010 Hb_009486_010 Hb_094647_010--Hb_009486_010 Hb_001575_040 Hb_001575_040 Hb_094647_010--Hb_001575_040 Hb_000414_030 Hb_000414_030 Hb_094647_010--Hb_000414_030 Hb_094647_010--Hb_006455_080 Hb_006455_110 Hb_006455_110 Hb_094647_010--Hb_006455_110 Hb_000256_210 Hb_000256_210 Hb_007827_020--Hb_000256_210 Hb_002159_030 Hb_002159_030 Hb_007827_020--Hb_002159_030 Hb_000441_160 Hb_000441_160 Hb_007827_020--Hb_000441_160 Hb_024272_010 Hb_024272_010 Hb_007827_020--Hb_024272_010 Hb_007827_020--Hb_007348_040 Hb_007827_020--Hb_000270_500 Hb_005715_020 Hb_005715_020 Hb_007021_030--Hb_005715_020 Hb_065395_010 Hb_065395_010 Hb_007021_030--Hb_065395_010 Hb_000217_050 Hb_000217_050 Hb_007021_030--Hb_000217_050 Hb_004650_090 Hb_004650_090 Hb_007021_030--Hb_004650_090 Hb_001396_150 Hb_001396_150 Hb_007021_030--Hb_001396_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0694966 0.0514292 0.00796135 0 0.0401541 0.254471
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0243804 0 0.0363056 0.022911 0.0404538

CAGE analysis