Hb_004738_090

Information

Type -
Description -
Location Contig4738: 102658-105783
Sequence    

Annotation

kegg
ID rcu:RCOM_0613890
description hypothetical protein
nr
ID XP_002528543.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SRC4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0613890 PE=4 SV=1
Gene Ontology
ID GO:0044237
description protein arginine n-methyltransferase 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44468: 104855-105546
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004738_090 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002067_160 0.0763279656 - - Protein MLO, putative [Ricinus communis]
3 Hb_000085_340 0.0870261871 - - PREDICTED: uncharacterized protein LOC105633038 isoform X1 [Jatropha curcas]
4 Hb_000264_190 0.0871542976 - - sphingolipid delta 4 desaturase/C-4 hydroxylase protein des2, putative [Ricinus communis]
5 Hb_002232_180 0.0890024959 - - PREDICTED: DUF21 domain-containing protein At2g14520-like isoform X1 [Populus euphratica]
6 Hb_010931_100 0.0893985772 - - PREDICTED: uncharacterized protein LOC105638669 [Jatropha curcas]
7 Hb_178968_150 0.0937237392 - - zinc finger protein, putative [Ricinus communis]
8 Hb_005488_100 0.095266137 - - hypothetical protein JCGZ_00295 [Jatropha curcas]
9 Hb_000500_310 0.0954240102 - - -
10 Hb_002609_260 0.0970425196 - - CCCH-type zinc finger protein [Hevea brasiliensis]
11 Hb_001140_160 0.097409231 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
12 Hb_002450_050 0.0978597727 - - PREDICTED: geraniol 8-hydroxylase-like [Solanum lycopersicum]
13 Hb_003636_090 0.0981462939 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3-like [Jatropha curcas]
14 Hb_001780_060 0.1022800707 - - PREDICTED: uncharacterized protein LOC105631129 [Jatropha curcas]
15 Hb_026048_090 0.104829557 - - conserved hypothetical protein [Ricinus communis]
16 Hb_007810_040 0.1048395521 - - PREDICTED: dolichyl-phosphate beta-glucosyltransferase [Jatropha curcas]
17 Hb_007178_010 0.1051886409 - - pseudo-hevein [Hevea brasiliensis]
18 Hb_004545_150 0.1063071162 - - PREDICTED: paramyosin [Jatropha curcas]
19 Hb_000117_040 0.1099638286 - - 30S ribosomal protein S6A [Hevea brasiliensis]
20 Hb_011609_190 0.1104823413 - - 14-3-3 protein 2 [Hevea brasiliensis]

Gene co-expression network

sample Hb_004738_090 Hb_004738_090 Hb_002067_160 Hb_002067_160 Hb_004738_090--Hb_002067_160 Hb_000085_340 Hb_000085_340 Hb_004738_090--Hb_000085_340 Hb_000264_190 Hb_000264_190 Hb_004738_090--Hb_000264_190 Hb_002232_180 Hb_002232_180 Hb_004738_090--Hb_002232_180 Hb_010931_100 Hb_010931_100 Hb_004738_090--Hb_010931_100 Hb_178968_150 Hb_178968_150 Hb_004738_090--Hb_178968_150 Hb_002067_160--Hb_000085_340 Hb_005488_100 Hb_005488_100 Hb_002067_160--Hb_005488_100 Hb_007178_010 Hb_007178_010 Hb_002067_160--Hb_007178_010 Hb_026048_090 Hb_026048_090 Hb_002067_160--Hb_026048_090 Hb_002067_160--Hb_002232_180 Hb_005754_020 Hb_005754_020 Hb_000085_340--Hb_005754_020 Hb_002391_110 Hb_002391_110 Hb_000085_340--Hb_002391_110 Hb_002377_040 Hb_002377_040 Hb_000085_340--Hb_002377_040 Hb_000085_340--Hb_026048_090 Hb_000176_140 Hb_000176_140 Hb_000085_340--Hb_000176_140 Hb_002609_260 Hb_002609_260 Hb_000264_190--Hb_002609_260 Hb_000264_190--Hb_010931_100 Hb_000563_540 Hb_000563_540 Hb_000264_190--Hb_000563_540 Hb_005730_020 Hb_005730_020 Hb_000264_190--Hb_005730_020 Hb_009510_030 Hb_009510_030 Hb_000264_190--Hb_009510_030 Hb_002890_220 Hb_002890_220 Hb_000264_190--Hb_002890_220 Hb_002232_180--Hb_007178_010 Hb_007810_040 Hb_007810_040 Hb_002232_180--Hb_007810_040 Hb_002232_180--Hb_002609_260 Hb_002232_180--Hb_005488_100 Hb_010931_100--Hb_002609_260 Hb_004545_150 Hb_004545_150 Hb_010931_100--Hb_004545_150 Hb_010931_100--Hb_000563_540 Hb_010931_100--Hb_005488_100 Hb_027751_020 Hb_027751_020 Hb_010931_100--Hb_027751_020 Hb_000028_470 Hb_000028_470 Hb_178968_150--Hb_000028_470 Hb_001493_100 Hb_001493_100 Hb_178968_150--Hb_001493_100 Hb_004813_010 Hb_004813_010 Hb_178968_150--Hb_004813_010 Hb_178968_150--Hb_005754_020 Hb_000784_090 Hb_000784_090 Hb_178968_150--Hb_000784_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
83.9149 3.34596 3.11898 4.93531 50.6134 48.8864
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
44.6745 26.6615 37.8105 4.13628 1.61446

CAGE analysis