Hb_004738_110

Information

Type -
Description -
Location Contig4738: 111743-119908
Sequence    

Annotation

kegg
ID rcu:RCOM_1177170
description Phosphoenolpyruvate carboxylase, putative (EC:1.3.1.74)
nr
ID AFN70424.1
description phosphoenolpyruvate carboxylase [Manihot esculenta]
swissprot
ID Q9FV65
description Phosphoenolpyruvate carboxylase 2 OS=Flaveria trinervia GN=PPCC PE=1 SV=1
trembl
ID U5HTH1
description Phosphoenolpyruvate carboxylase OS=Manihot esculenta GN=PEPC PE=2 SV=1
Gene Ontology
ID GO:0005829
description phosphoenolpyruvate carboxylase 3 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44470: 111795-119851 , PASA_asmbl_44471: 114958-115070 , PASA_asmbl_44472: 116214-116357
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004738_110 0.0 - - phosphoenolpyruvate carboxylase [Manihot esculenta]
2 Hb_143629_060 0.1348296442 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic [Jatropha curcas]
3 Hb_005288_110 0.1384904682 - - PREDICTED: uncharacterized protein LOC105647752 [Jatropha curcas]
4 Hb_006052_030 0.1472135655 - - PREDICTED: dnaJ protein ERDJ3A [Jatropha curcas]
5 Hb_048141_030 0.1492364338 - - PREDICTED: pentatricopeptide repeat-containing protein At3g59040-like [Prunus mume]
6 Hb_003058_020 0.1516543643 - - PREDICTED: proteinaceous RNase P 1, chloroplastic/mitochondrial-like [Jatropha curcas]
7 Hb_002053_110 0.1567858353 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
8 Hb_022250_100 0.1580493695 - - calnexin, putative [Ricinus communis]
9 Hb_137276_010 0.1583999488 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
10 Hb_000084_280 0.1630857375 - - PREDICTED: signal recognition particle 54 kDa protein, chloroplastic [Jatropha curcas]
11 Hb_048141_020 0.164342755 - - tetratricopeptide repeat-like superfamily protein, partial [Manihot esculenta]
12 Hb_001675_190 0.1652194411 - - PREDICTED: probable plastidic glucose transporter 3 [Jatropha curcas]
13 Hb_002495_060 0.1661138045 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
14 Hb_011931_060 0.1672459779 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP62-like [Jatropha curcas]
15 Hb_007313_100 0.1683024378 desease resistance Gene Name: NB-ARC Disease resistance protein RPS2, putative [Ricinus communis]
16 Hb_000958_070 0.1725551488 - - hypothetical protein PRUPE_ppa007681mg [Prunus persica]
17 Hb_004987_070 0.1727568025 - - PREDICTED: heat shock 70 kDa protein 17-like isoform X1 [Jatropha curcas]
18 Hb_005529_030 0.1740664915 - - PREDICTED: cytochrome P450 94A1-like [Populus euphratica]
19 Hb_003900_030 0.1744308392 - - PREDICTED: pentatricopeptide repeat-containing protein At2g41720 isoform X1 [Jatropha curcas]
20 Hb_000934_110 0.1750472996 - - PREDICTED: protein trichome berefringence-like 7 [Jatropha curcas]

Gene co-expression network

sample Hb_004738_110 Hb_004738_110 Hb_143629_060 Hb_143629_060 Hb_004738_110--Hb_143629_060 Hb_005288_110 Hb_005288_110 Hb_004738_110--Hb_005288_110 Hb_006052_030 Hb_006052_030 Hb_004738_110--Hb_006052_030 Hb_048141_030 Hb_048141_030 Hb_004738_110--Hb_048141_030 Hb_003058_020 Hb_003058_020 Hb_004738_110--Hb_003058_020 Hb_002053_110 Hb_002053_110 Hb_004738_110--Hb_002053_110 Hb_000084_280 Hb_000084_280 Hb_143629_060--Hb_000084_280 Hb_002276_070 Hb_002276_070 Hb_143629_060--Hb_002276_070 Hb_007313_100 Hb_007313_100 Hb_143629_060--Hb_007313_100 Hb_008092_060 Hb_008092_060 Hb_143629_060--Hb_008092_060 Hb_143629_060--Hb_002053_110 Hb_003777_250 Hb_003777_250 Hb_005288_110--Hb_003777_250 Hb_012165_020 Hb_012165_020 Hb_005288_110--Hb_012165_020 Hb_001266_120 Hb_001266_120 Hb_005288_110--Hb_001266_120 Hb_003632_030 Hb_003632_030 Hb_005288_110--Hb_003632_030 Hb_002320_090 Hb_002320_090 Hb_005288_110--Hb_002320_090 Hb_000958_070 Hb_000958_070 Hb_006052_030--Hb_000958_070 Hb_000334_170 Hb_000334_170 Hb_006052_030--Hb_000334_170 Hb_001232_100 Hb_001232_100 Hb_006052_030--Hb_001232_100 Hb_000260_560 Hb_000260_560 Hb_006052_030--Hb_000260_560 Hb_022250_100 Hb_022250_100 Hb_006052_030--Hb_022250_100 Hb_000041_300 Hb_000041_300 Hb_006052_030--Hb_000041_300 Hb_065525_130 Hb_065525_130 Hb_048141_030--Hb_065525_130 Hb_000175_590 Hb_000175_590 Hb_048141_030--Hb_000175_590 Hb_000015_100 Hb_000015_100 Hb_048141_030--Hb_000015_100 Hb_006570_010 Hb_006570_010 Hb_048141_030--Hb_006570_010 Hb_000085_140 Hb_000085_140 Hb_048141_030--Hb_000085_140 Hb_000948_170 Hb_000948_170 Hb_048141_030--Hb_000948_170 Hb_004987_070 Hb_004987_070 Hb_003058_020--Hb_004987_070 Hb_003058_020--Hb_000015_100 Hb_048141_020 Hb_048141_020 Hb_003058_020--Hb_048141_020 Hb_011931_060 Hb_011931_060 Hb_003058_020--Hb_011931_060 Hb_006618_050 Hb_006618_050 Hb_003058_020--Hb_006618_050 Hb_007035_040 Hb_007035_040 Hb_003058_020--Hb_007035_040 Hb_000363_060 Hb_000363_060 Hb_002053_110--Hb_000363_060 Hb_000816_100 Hb_000816_100 Hb_002053_110--Hb_000816_100 Hb_001220_050 Hb_001220_050 Hb_002053_110--Hb_001220_050 Hb_007769_040 Hb_007769_040 Hb_002053_110--Hb_007769_040 Hb_000033_110 Hb_000033_110 Hb_002053_110--Hb_000033_110 Hb_001660_120 Hb_001660_120 Hb_002053_110--Hb_001660_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.5054 13.3098 40.1013 40.1967 69.0752 51.7674
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.32695 5.76687 13.2402 13.3985 94.7404

CAGE analysis