Hb_004754_070

Information

Type -
Description -
Location Contig4754: 53626-55872
Sequence    

Annotation

kegg
ID pop:POPTR_0009s16030g
description 60S ribosomal protein L30
nr
ID XP_012471468.1
description PREDICTED: 60S ribosomal protein L30-like [Gossypium raimondii]
swissprot
ID O49884
description 60S ribosomal protein L30 OS=Lupinus luteus GN=RPL30 PE=3 SV=1
trembl
ID A0A0D2RMC7
description Gossypium raimondii chromosome 3, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_003G140200 PE=4 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l30

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44491: 53527-55930
cDNA
(Sanger)
(ID:Location)		 029_K04.ab1: 53601-53745 , 032_B13.ab1: 53529-55930 , 033_D12.ab1: 53555-55930

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004754_070 0.0 - - PREDICTED: 60S ribosomal protein L30-like [Gossypium raimondii]
2 Hb_012395_130 0.0512997627 - - Os02g0814700 [Oryza sativa Japonica Group]
3 Hb_001780_050 0.0621370563 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2 [Jatropha curcas]
4 Hb_005914_200 0.0664953065 - - PREDICTED: 60S ribosomal protein L23-like isoform X1 [Tarenaya hassleriana]
5 Hb_000163_130 0.0706556823 - - hypothetical protein CICLE_v10022870mg [Citrus clementina]
6 Hb_011377_020 0.0762433065 - - hypothetical protein CARUB_v10018269mg, partial [Capsella rubella]
7 Hb_004007_180 0.0904075099 - - PREDICTED: uncharacterized protein LOC105639838 [Jatropha curcas]
8 Hb_000367_210 0.0922047768 - - PREDICTED: dolichol-phosphate mannosyltransferase subunit 3 [Jatropha curcas]
9 Hb_000389_080 0.0968340451 - - PREDICTED: uncharacterized protein At4g26485-like [Jatropha curcas]
10 Hb_008748_020 0.0978491596 - - hypothetical protein B456_005G210700 [Gossypium raimondii]
11 Hb_012539_020 0.0981290268 - - protein binding/ubiquitin-protein ligase 4 [Hevea brasiliensis]
12 Hb_000976_250 0.1012265464 - - -
13 Hb_002316_120 0.1013896605 - - hypothetical protein POPTR_0015s08460g [Populus trichocarpa]
14 Hb_002835_320 0.1017398427 - - 60S ribosomal protein L27B [Hevea brasiliensis]
15 Hb_006588_080 0.1024486945 - - hypothetical protein JCGZ_25746 [Jatropha curcas]
16 Hb_000599_280 0.1034522306 - - PREDICTED: 60S ribosomal protein L14-1 [Jatropha curcas]
17 Hb_005474_060 0.1036745251 - - hypothetical protein PHAVU_011G019700g [Phaseolus vulgaris]
18 Hb_172221_010 0.1043719964 - - PREDICTED: 60S ribosomal protein L37-1 [Jatropha curcas]
19 Hb_000236_150 0.1044061674 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
20 Hb_000905_180 0.1046222633 - - 60S ribosomal protein L31A [Hevea brasiliensis]

Gene co-expression network

sample Hb_004754_070 Hb_004754_070 Hb_012395_130 Hb_012395_130 Hb_004754_070--Hb_012395_130 Hb_001780_050 Hb_001780_050 Hb_004754_070--Hb_001780_050 Hb_005914_200 Hb_005914_200 Hb_004754_070--Hb_005914_200 Hb_000163_130 Hb_000163_130 Hb_004754_070--Hb_000163_130 Hb_011377_020 Hb_011377_020 Hb_004754_070--Hb_011377_020 Hb_004007_180 Hb_004007_180 Hb_004754_070--Hb_004007_180 Hb_012395_130--Hb_011377_020 Hb_012395_130--Hb_001780_050 Hb_172221_010 Hb_172221_010 Hb_012395_130--Hb_172221_010 Hb_000997_120 Hb_000997_120 Hb_012395_130--Hb_000997_120 Hb_007120_090 Hb_007120_090 Hb_012395_130--Hb_007120_090 Hb_001780_050--Hb_000163_130 Hb_001780_050--Hb_005914_200 Hb_000236_150 Hb_000236_150 Hb_001780_050--Hb_000236_150 Hb_012539_020 Hb_012539_020 Hb_001780_050--Hb_012539_020 Hb_005914_200--Hb_000236_150 Hb_005914_200--Hb_012539_020 Hb_005914_200--Hb_000163_130 Hb_000976_250 Hb_000976_250 Hb_005914_200--Hb_000976_250 Hb_002835_320 Hb_002835_320 Hb_000163_130--Hb_002835_320 Hb_000905_180 Hb_000905_180 Hb_000163_130--Hb_000905_180 Hb_000163_130--Hb_000236_150 Hb_003053_030 Hb_003053_030 Hb_000163_130--Hb_003053_030 Hb_000599_280 Hb_000599_280 Hb_011377_020--Hb_000599_280 Hb_006588_080 Hb_006588_080 Hb_011377_020--Hb_006588_080 Hb_011377_020--Hb_001780_050 Hb_011377_020--Hb_004007_180 Hb_000270_720 Hb_000270_720 Hb_004007_180--Hb_000270_720 Hb_002316_120 Hb_002316_120 Hb_004007_180--Hb_002316_120 Hb_004007_180--Hb_000599_280 Hb_004007_180--Hb_006588_080 Hb_000789_110 Hb_000789_110 Hb_004007_180--Hb_000789_110 Hb_004735_050 Hb_004735_050 Hb_004007_180--Hb_004735_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
94.0854 17.1625 62.3646 125.065 52.5184 185.327
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
334.864 710.38 247.291 165.037 69.3906

CAGE analysis