Hb_004767_010

Information

Type -
Description -
Location Contig4767: 129-1980
Sequence    

Annotation

kegg
ID cic:CICLE_v10010736mg
description hypothetical protein
nr
ID XP_006453645.1
description hypothetical protein CICLE_v10010736mg [Citrus clementina]
swissprot
ID -
description -
trembl
ID V4URB4
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10010736mg PE=4 SV=1
Gene Ontology
ID GO:0070011
description lysosomal pro-x

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004767_010 0.0 - - hypothetical protein CICLE_v10010736mg [Citrus clementina]
2 Hb_161954_010 0.0334686178 - - hypothetical protein JCGZ_05404 [Jatropha curcas]
3 Hb_002393_060 0.0389176652 transcription factor TF Family: MYB PREDICTED: transcription factor WER-like [Jatropha curcas]
4 Hb_091826_010 0.1018735743 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
5 Hb_004089_010 0.111314636 - - hypothetical protein MIMGU_mgv1a018902mg [Erythranthe guttata]
6 Hb_000983_180 0.1130893209 - - cytochrome P450, putative [Ricinus communis]
7 Hb_006816_540 0.1141216806 - - PREDICTED: bidirectional sugar transporter SWEET16-like [Jatropha curcas]
8 Hb_162047_010 0.1268748505 - - PREDICTED: protein indeterminate-domain 16 [Jatropha curcas]
9 Hb_010374_010 0.1366385493 - - TMV resistance protein N, putative [Ricinus communis]
10 Hb_005839_070 0.1366486724 - - hypothetical protein POPTR_0013s08160g [Populus trichocarpa]
11 Hb_000770_020 0.1366983813 - - hypothetical protein POPTR_0001s39195g [Populus trichocarpa]
12 Hb_011045_020 0.1367420718 - - hypothetical protein CICLE_v100140161mg, partial [Citrus clementina]
13 Hb_000302_050 0.1367955881 - - -
14 Hb_003453_070 0.136806896 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor LEP [Jatropha curcas]
15 Hb_126916_010 0.136828665 - - PREDICTED: putative receptor-like protein kinase At3g47110, partial [Jatropha curcas]
16 Hb_006856_060 0.137040196 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
17 Hb_001975_060 0.1378815885 - - hypothetical protein JCGZ_11079 [Jatropha curcas]
18 Hb_005096_020 0.1380533243 - - PREDICTED: DIS3-like exonuclease 2-like isoform X1 [Citrus sinensis]
19 Hb_000172_020 0.1384824755 - - PREDICTED: succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial [Vitis vinifera]
20 Hb_103659_010 0.1390588097 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004767_010 Hb_004767_010 Hb_161954_010 Hb_161954_010 Hb_004767_010--Hb_161954_010 Hb_002393_060 Hb_002393_060 Hb_004767_010--Hb_002393_060 Hb_091826_010 Hb_091826_010 Hb_004767_010--Hb_091826_010 Hb_004089_010 Hb_004089_010 Hb_004767_010--Hb_004089_010 Hb_000983_180 Hb_000983_180 Hb_004767_010--Hb_000983_180 Hb_006816_540 Hb_006816_540 Hb_004767_010--Hb_006816_540 Hb_161954_010--Hb_002393_060 Hb_161954_010--Hb_006816_540 Hb_161954_010--Hb_000983_180 Hb_161954_010--Hb_091826_010 Hb_161954_010--Hb_004089_010 Hb_002393_060--Hb_004089_010 Hb_002393_060--Hb_091826_010 Hb_002393_060--Hb_006816_540 Hb_162047_010 Hb_162047_010 Hb_002393_060--Hb_162047_010 Hb_015183_050 Hb_015183_050 Hb_091826_010--Hb_015183_050 Hb_004961_010 Hb_004961_010 Hb_091826_010--Hb_004961_010 Hb_008289_020 Hb_008289_020 Hb_091826_010--Hb_008289_020 Hb_081065_010 Hb_081065_010 Hb_091826_010--Hb_081065_010 Hb_021485_010 Hb_021485_010 Hb_091826_010--Hb_021485_010 Hb_012753_100 Hb_012753_100 Hb_091826_010--Hb_012753_100 Hb_001998_130 Hb_001998_130 Hb_004089_010--Hb_001998_130 Hb_004089_010--Hb_091826_010 Hb_001131_100 Hb_001131_100 Hb_004089_010--Hb_001131_100 Hb_000770_020 Hb_000770_020 Hb_000983_180--Hb_000770_020 Hb_011045_020 Hb_011045_020 Hb_000983_180--Hb_011045_020 Hb_010374_010 Hb_010374_010 Hb_000983_180--Hb_010374_010 Hb_005839_070 Hb_005839_070 Hb_000983_180--Hb_005839_070 Hb_000302_050 Hb_000302_050 Hb_000983_180--Hb_000302_050 Hb_126916_010 Hb_126916_010 Hb_000983_180--Hb_126916_010 Hb_007885_120 Hb_007885_120 Hb_006816_540--Hb_007885_120 Hb_006890_050 Hb_006890_050 Hb_006816_540--Hb_006890_050 Hb_001227_010 Hb_001227_010 Hb_006816_540--Hb_001227_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.16564 0 1.01096 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0832252 0

CAGE analysis