Hb_004767_060

Information

Type -
Description -
Location Contig4767: 37654-42719
Sequence    

Annotation

kegg
ID gmx:102665260
description uncharacterized LOC102665260
nr
ID XP_012435315.1
description PREDICTED: uncharacterized protein LOC105761928 [Gossypium raimondii]
swissprot
ID P92520
description Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana GN=AtMg00820 PE=4 SV=1
trembl
ID A0A0B2NXW1
description Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Glycine soja GN=glysoja_034513 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44507: 41886-43349
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004767_060 0.0 - - PREDICTED: uncharacterized protein LOC105761928 [Gossypium raimondii]
2 Hb_004007_230 0.1465183797 - - PREDICTED: putative formamidase C869.04 isoform X1 [Jatropha curcas]
3 Hb_000417_150 0.1554092934 - - hypothetical protein JCGZ_21586 [Jatropha curcas]
4 Hb_002609_130 0.1570080522 - - PREDICTED: cytochrome P450 86A1 [Jatropha curcas]
5 Hb_001357_360 0.1634519863 - - zinc finger protein, putative [Ricinus communis]
6 Hb_005306_020 0.1639396641 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86 [Jatropha curcas]
7 Hb_061350_010 0.1639518409 - - PREDICTED: disease resistance protein RPS6-like isoform X2 [Jatropha curcas]
8 Hb_026053_030 0.1641490508 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
9 Hb_000044_050 0.1671079846 - - PREDICTED: amino acid permease 6-like isoform X1 [Jatropha curcas]
10 Hb_008195_020 0.1683627411 - - Vacuolar-processing enzyme precursor [Ricinus communis]
11 Hb_001971_020 0.1694237174 - - PREDICTED: alpha-dioxygenase 2 [Populus euphratica]
12 Hb_085010_010 0.1775827792 - - PREDICTED: MLO-like protein 3 isoform X2 [Vitis vinifera]
13 Hb_008111_010 0.1781048604 - - hypothetical protein VITISV_021527 [Vitis vinifera]
14 Hb_000866_390 0.1788100968 - - PREDICTED: O-glucosyltransferase rumi homolog [Jatropha curcas]
15 Hb_002217_070 0.1792623197 - - PREDICTED: uncharacterized protein LOC105643596 [Jatropha curcas]
16 Hb_010261_030 0.1800799934 - - polyprotein [Citrus endogenous pararetrovirus]
17 Hb_000816_160 0.1817882382 - - PREDICTED: peroxidase 4-like [Jatropha curcas]
18 Hb_000059_080 0.1839304601 - - PREDICTED: uncharacterized protein LOC105629177 [Jatropha curcas]
19 Hb_004143_140 0.1856859336 - - glycosyltransferase, partial [Arabidopsis thaliana]
20 Hb_000767_010 0.1865896446 - - PREDICTED: geraniol 8-hydroxylase-like isoform X2 [Solanum lycopersicum]

Gene co-expression network

sample Hb_004767_060 Hb_004767_060 Hb_004007_230 Hb_004007_230 Hb_004767_060--Hb_004007_230 Hb_000417_150 Hb_000417_150 Hb_004767_060--Hb_000417_150 Hb_002609_130 Hb_002609_130 Hb_004767_060--Hb_002609_130 Hb_001357_360 Hb_001357_360 Hb_004767_060--Hb_001357_360 Hb_005306_020 Hb_005306_020 Hb_004767_060--Hb_005306_020 Hb_061350_010 Hb_061350_010 Hb_004767_060--Hb_061350_010 Hb_026053_030 Hb_026053_030 Hb_004007_230--Hb_026053_030 Hb_004007_230--Hb_001357_360 Hb_004143_140 Hb_004143_140 Hb_004007_230--Hb_004143_140 Hb_000044_050 Hb_000044_050 Hb_004007_230--Hb_000044_050 Hb_003077_140 Hb_003077_140 Hb_004007_230--Hb_003077_140 Hb_000767_010 Hb_000767_010 Hb_004007_230--Hb_000767_010 Hb_000417_150--Hb_026053_030 Hb_028872_100 Hb_028872_100 Hb_000417_150--Hb_028872_100 Hb_000417_150--Hb_004007_230 Hb_031949_010 Hb_031949_010 Hb_000417_150--Hb_031949_010 Hb_000417_150--Hb_000044_050 Hb_001411_100 Hb_001411_100 Hb_000417_150--Hb_001411_100 Hb_004605_020 Hb_004605_020 Hb_002609_130--Hb_004605_020 Hb_005155_010 Hb_005155_010 Hb_002609_130--Hb_005155_010 Hb_000847_010 Hb_000847_010 Hb_002609_130--Hb_000847_010 Hb_000816_160 Hb_000816_160 Hb_002609_130--Hb_000816_160 Hb_010261_030 Hb_010261_030 Hb_002609_130--Hb_010261_030 Hb_005271_180 Hb_005271_180 Hb_002609_130--Hb_005271_180 Hb_001971_020 Hb_001971_020 Hb_001357_360--Hb_001971_020 Hb_001357_360--Hb_003077_140 Hb_001357_360--Hb_000767_010 Hb_005470_040 Hb_005470_040 Hb_001357_360--Hb_005470_040 Hb_123560_050 Hb_123560_050 Hb_001357_360--Hb_123560_050 Hb_008111_010 Hb_008111_010 Hb_005306_020--Hb_008111_010 Hb_005306_020--Hb_001971_020 Hb_005306_020--Hb_001357_360 Hb_005306_020--Hb_028872_100 Hb_000264_340 Hb_000264_340 Hb_005306_020--Hb_000264_340 Hb_005306_020--Hb_000767_010 Hb_027556_040 Hb_027556_040 Hb_061350_010--Hb_027556_040 Hb_001754_200 Hb_001754_200 Hb_061350_010--Hb_001754_200 Hb_002329_030 Hb_002329_030 Hb_061350_010--Hb_002329_030 Hb_003142_090 Hb_003142_090 Hb_061350_010--Hb_003142_090 Hb_000819_010 Hb_000819_010 Hb_061350_010--Hb_000819_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.367674 0.0391774 0.124948 0.023883 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.015196 0 0.150954 0.290144

CAGE analysis