Hb_004767_090

Information

Type -
Description -
Location Contig4767: 84085-88584
Sequence    

Annotation

kegg
ID rcu:RCOM_0476540
description Aspartic proteinase Asp1 precursor, putative (EC:3.4.23.3)
nr
ID XP_002523756.1
description Aspartic proteinase Asp1 precursor, putative [Ricinus communis]
swissprot
ID Q9S9K4
description Aspartic proteinase-like protein 2 OS=Arabidopsis thaliana GN=At1g65240 PE=1 SV=2
trembl
ID B9SCN7
description Aspartic proteinase Asp1, putative OS=Ricinus communis GN=RCOM_0476540 PE=4 SV=1
Gene Ontology
ID GO:0004190
description aspartic proteinase-like protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004767_090 0.0 - - Aspartic proteinase Asp1 precursor, putative [Ricinus communis]
2 Hb_000343_190 0.101954407 - - PREDICTED: coatomer subunit beta'-2 isoform X1 [Jatropha curcas]
3 Hb_004567_100 0.1315803733 - - PREDICTED: uncharacterized protein LOC105644934 [Jatropha curcas]
4 Hb_000755_080 0.132314915 - - hypothetical protein RCOM_1016710 [Ricinus communis]
5 Hb_005228_080 0.1348118876 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 3-I [Jatropha curcas]
6 Hb_017711_020 0.1372353817 - - PREDICTED: cysteine-rich repeat secretory protein 56 isoform X1 [Jatropha curcas]
7 Hb_005738_010 0.1387977464 - - -
8 Hb_000270_140 0.1423465564 - - PREDICTED: uncharacterized protein LOC105640478 isoform X1 [Jatropha curcas]
9 Hb_008595_010 0.1441305976 - - PREDICTED: pentatricopeptide repeat-containing protein At1g06710, mitochondrial [Jatropha curcas]
10 Hb_000021_040 0.1441865529 - - PREDICTED: villin-3-like isoform X1 [Populus euphratica]
11 Hb_000768_190 0.1509218982 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
12 Hb_058643_010 0.1517771419 - - hydrolase, putative [Ricinus communis]
13 Hb_048476_170 0.1522495798 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 3-II-like [Citrus sinensis]
14 Hb_188964_010 0.1531648354 - - maintenance of killer 16 (mak16) protein, putative [Ricinus communis]
15 Hb_002508_020 0.1549176312 - - PREDICTED: SNF1-related protein kinase regulatory subunit beta-1 [Jatropha curcas]
16 Hb_000264_010 0.1558259562 - - PREDICTED: uncharacterized protein LOC105649505 [Jatropha curcas]
17 Hb_000037_110 0.156292487 - - PREDICTED: cation/H(+) antiporter 18-like [Populus euphratica]
18 Hb_000261_520 0.1575229812 - - PREDICTED: uncharacterized protein LOC105633192 [Jatropha curcas]
19 Hb_000832_130 0.1590484515 - - PREDICTED: pentatricopeptide repeat-containing protein At2g39620 [Jatropha curcas]
20 Hb_000441_180 0.1599784505 - - Early endosome antigen, putative [Ricinus communis]

Gene co-expression network

sample Hb_004767_090 Hb_004767_090 Hb_000343_190 Hb_000343_190 Hb_004767_090--Hb_000343_190 Hb_004567_100 Hb_004567_100 Hb_004767_090--Hb_004567_100 Hb_000755_080 Hb_000755_080 Hb_004767_090--Hb_000755_080 Hb_005228_080 Hb_005228_080 Hb_004767_090--Hb_005228_080 Hb_017711_020 Hb_017711_020 Hb_004767_090--Hb_017711_020 Hb_005738_010 Hb_005738_010 Hb_004767_090--Hb_005738_010 Hb_000021_040 Hb_000021_040 Hb_000343_190--Hb_000021_040 Hb_000768_190 Hb_000768_190 Hb_000343_190--Hb_000768_190 Hb_005211_100 Hb_005211_100 Hb_000343_190--Hb_005211_100 Hb_009535_020 Hb_009535_020 Hb_000343_190--Hb_009535_020 Hb_000059_150 Hb_000059_150 Hb_000343_190--Hb_000059_150 Hb_005214_160 Hb_005214_160 Hb_004567_100--Hb_005214_160 Hb_002701_080 Hb_002701_080 Hb_004567_100--Hb_002701_080 Hb_012654_010 Hb_012654_010 Hb_004567_100--Hb_012654_010 Hb_004567_100--Hb_000059_150 Hb_003506_080 Hb_003506_080 Hb_004567_100--Hb_003506_080 Hb_000270_140 Hb_000270_140 Hb_004567_100--Hb_000270_140 Hb_000261_520 Hb_000261_520 Hb_000755_080--Hb_000261_520 Hb_000365_140 Hb_000365_140 Hb_000755_080--Hb_000365_140 Hb_005895_040 Hb_005895_040 Hb_000755_080--Hb_005895_040 Hb_004656_060 Hb_004656_060 Hb_000755_080--Hb_004656_060 Hb_000375_030 Hb_000375_030 Hb_000755_080--Hb_000375_030 Hb_000640_220 Hb_000640_220 Hb_000755_080--Hb_000640_220 Hb_188964_010 Hb_188964_010 Hb_005228_080--Hb_188964_010 Hb_005228_080--Hb_004567_100 Hb_002687_190 Hb_002687_190 Hb_005228_080--Hb_002687_190 Hb_002235_320 Hb_002235_320 Hb_005228_080--Hb_002235_320 Hb_000003_790 Hb_000003_790 Hb_005228_080--Hb_000003_790 Hb_003581_020 Hb_003581_020 Hb_005228_080--Hb_003581_020 Hb_017711_020--Hb_000270_140 Hb_017711_020--Hb_004567_100 Hb_017711_020--Hb_000003_790 Hb_000940_040 Hb_000940_040 Hb_017711_020--Hb_000940_040 Hb_000152_560 Hb_000152_560 Hb_017711_020--Hb_000152_560 Hb_007441_070 Hb_007441_070 Hb_017711_020--Hb_007441_070 Hb_005738_010--Hb_000343_190 Hb_000264_010 Hb_000264_010 Hb_005738_010--Hb_000264_010 Hb_008643_060 Hb_008643_060 Hb_005738_010--Hb_008643_060 Hb_002601_120 Hb_002601_120 Hb_005738_010--Hb_002601_120 Hb_005738_010--Hb_017711_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.80254 4.75216 3.92551 3.58545 20.2012 14.4956
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.56181 2.84723 7.60363 5.10788 3.30678

CAGE analysis