Hb_004770_050

Information

Type -
Description -
Location Contig4770: 99223-105360
Sequence    

Annotation

kegg
ID pop:POPTR_0007s07690g
description POPTRDRAFT_562810; hypothetical protein
nr
ID XP_011006772.1
description PREDICTED: serine carboxypeptidase-like 35 [Populus euphratica]
swissprot
ID Q9LEY1
description Serine carboxypeptidase-like 35 OS=Arabidopsis thaliana GN=SCPL35 PE=2 SV=1
trembl
ID B9HGL0
description Carboxypeptidase OS=Populus trichocarpa GN=POPTR_0007s07690g PE=3 SV=2
Gene Ontology
ID GO:0004185
description serine carboxypeptidase-like 35

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004770_050 0.0 - - PREDICTED: serine carboxypeptidase-like 35 [Populus euphratica]
2 Hb_000221_120 0.1622402411 - - PREDICTED: uncharacterized protein At1g04910 isoform X2 [Jatropha curcas]
3 Hb_037793_010 0.1674059061 - - PREDICTED: microtubule-associated protein 70-2-like [Jatropha curcas]
4 Hb_000579_060 0.1679790309 - - PREDICTED: uncharacterized protein LOC105633849 isoform X1 [Jatropha curcas]
5 Hb_007456_010 0.1759084586 - - hypothetical protein L484_003540 [Morus notabilis]
6 Hb_003471_020 0.1779995914 - - PREDICTED: ADP-ribosylation factor-like protein 8A [Jatropha curcas]
7 Hb_006478_060 0.1807317954 - - PREDICTED: homocysteine S-methyltransferase 2 isoform X1 [Jatropha curcas]
8 Hb_019053_020 0.1807846838 - - hypothetical protein MIMGU_mgv1a0105441mg, partial [Erythranthe guttata]
9 Hb_001080_130 0.1832307016 - - catalase [Hevea brasiliensis]
10 Hb_008029_020 0.1843059741 - - PREDICTED: uncharacterized protein LOC105631777 [Jatropha curcas]
11 Hb_000366_190 0.1844440793 - - Phosphoenolpyruvate carboxylase, putative [Ricinus communis]
12 Hb_004040_040 0.1848107833 desease resistance Gene Name: ABC_tran hypothetical protein POPTR_0006s07370g [Populus trichocarpa]
13 Hb_007456_040 0.1851468346 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B [Jatropha curcas]
14 Hb_001454_380 0.1871387535 - - PREDICTED: Fanconi anemia group I protein [Jatropha curcas]
15 Hb_002235_120 0.1871413846 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
16 Hb_000085_090 0.1877121336 - - hypothetical protein JCGZ_00955 [Jatropha curcas]
17 Hb_002391_360 0.1892775645 - - hypothetical protein CICLE_v10026208mg [Citrus clementina]
18 Hb_000021_030 0.1918485532 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Jatropha curcas]
19 Hb_000732_170 0.1922580775 - - PREDICTED: putative PAP-specific phosphatase, mitochondrial isoform X1 [Jatropha curcas]
20 Hb_000365_030 0.1927565481 - - PREDICTED: transmembrane protein 87B [Jatropha curcas]

Gene co-expression network

sample Hb_004770_050 Hb_004770_050 Hb_000221_120 Hb_000221_120 Hb_004770_050--Hb_000221_120 Hb_037793_010 Hb_037793_010 Hb_004770_050--Hb_037793_010 Hb_000579_060 Hb_000579_060 Hb_004770_050--Hb_000579_060 Hb_007456_010 Hb_007456_010 Hb_004770_050--Hb_007456_010 Hb_003471_020 Hb_003471_020 Hb_004770_050--Hb_003471_020 Hb_006478_060 Hb_006478_060 Hb_004770_050--Hb_006478_060 Hb_000221_120--Hb_006478_060 Hb_004974_010 Hb_004974_010 Hb_000221_120--Hb_004974_010 Hb_000365_030 Hb_000365_030 Hb_000221_120--Hb_000365_030 Hb_001080_130 Hb_001080_130 Hb_000221_120--Hb_001080_130 Hb_001675_070 Hb_001675_070 Hb_000221_120--Hb_001675_070 Hb_001977_010 Hb_001977_010 Hb_000221_120--Hb_001977_010 Hb_000062_060 Hb_000062_060 Hb_037793_010--Hb_000062_060 Hb_011206_010 Hb_011206_010 Hb_037793_010--Hb_011206_010 Hb_000021_020 Hb_000021_020 Hb_037793_010--Hb_000021_020 Hb_001508_020 Hb_001508_020 Hb_037793_010--Hb_001508_020 Hb_000085_090 Hb_000085_090 Hb_037793_010--Hb_000085_090 Hb_037793_010--Hb_007456_010 Hb_003687_210 Hb_003687_210 Hb_000579_060--Hb_003687_210 Hb_006831_070 Hb_006831_070 Hb_000579_060--Hb_006831_070 Hb_000608_350 Hb_000608_350 Hb_000579_060--Hb_000608_350 Hb_000056_160 Hb_000056_160 Hb_000579_060--Hb_000056_160 Hb_000599_170 Hb_000599_170 Hb_000579_060--Hb_000599_170 Hb_000579_070 Hb_000579_070 Hb_000579_060--Hb_000579_070 Hb_000453_140 Hb_000453_140 Hb_007456_010--Hb_000453_140 Hb_027380_030 Hb_027380_030 Hb_007456_010--Hb_027380_030 Hb_002307_350 Hb_002307_350 Hb_007456_010--Hb_002307_350 Hb_006915_020 Hb_006915_020 Hb_007456_010--Hb_006915_020 Hb_007456_010--Hb_000021_020 Hb_001198_150 Hb_001198_150 Hb_007456_010--Hb_001198_150 Hb_004040_040 Hb_004040_040 Hb_003471_020--Hb_004040_040 Hb_148131_010 Hb_148131_010 Hb_003471_020--Hb_148131_010 Hb_027136_010 Hb_027136_010 Hb_003471_020--Hb_027136_010 Hb_150346_010 Hb_150346_010 Hb_003471_020--Hb_150346_010 Hb_000424_150 Hb_000424_150 Hb_003471_020--Hb_000424_150 Hb_002814_060 Hb_002814_060 Hb_003471_020--Hb_002814_060 Hb_002374_320 Hb_002374_320 Hb_006478_060--Hb_002374_320 Hb_010053_030 Hb_010053_030 Hb_006478_060--Hb_010053_030 Hb_011930_080 Hb_011930_080 Hb_006478_060--Hb_011930_080 Hb_000923_080 Hb_000923_080 Hb_006478_060--Hb_000923_080 Hb_001621_130 Hb_001621_130 Hb_006478_060--Hb_001621_130 Hb_174821_010 Hb_174821_010 Hb_006478_060--Hb_174821_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.60643 4.14718 10.1425 11.9278 16.6329 18.562
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.71803 1.11961 2.13541 15.7956 3.79797

CAGE analysis