Hb_004774_030

Information

Type -
Description -
Location Contig4774: 37637-38014
Sequence    

Annotation

kegg
ID pmum:103329383
description uncharacterized LOC103329383
nr
ID XP_012089878.1
description PREDICTED: uncharacterized protein LOC105648177 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JFX9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01814 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44535: 37622-37830
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004774_030 0.0 - - PREDICTED: uncharacterized protein LOC105648177 [Jatropha curcas]
2 Hb_000960_090 0.1638024627 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003813_060 0.1769678155 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001080_050 0.1771469439 - - PREDICTED: uncharacterized protein LOC105635235 [Jatropha curcas]
5 Hb_001902_200 0.194610291 - - PREDICTED: tubulin beta-1 chain [Eucalyptus grandis]
6 Hb_000566_130 0.1976781843 - - PREDICTED: probable DNA primase large subunit isoform X2 [Jatropha curcas]
7 Hb_000668_060 0.2054750216 - - Pollen-specific protein C13 precursor, putative [Ricinus communis]
8 Hb_000260_650 0.2055926466 - - PREDICTED: protein PFC0760c [Jatropha curcas]
9 Hb_001366_170 0.2108126865 - - PREDICTED: uncharacterized protein C594.04c [Jatropha curcas]
10 Hb_124677_030 0.2187660487 - - PREDICTED: uncharacterized protein LOC105650473 [Jatropha curcas]
11 Hb_000282_050 0.2199995611 - - calcineurin B, putative [Ricinus communis]
12 Hb_011828_040 0.2207808675 - - PREDICTED: uncharacterized protein LOC105642173 isoform X2 [Jatropha curcas]
13 Hb_188281_030 0.2220085264 - - PREDICTED: uridine nucleosidase 1 [Jatropha curcas]
14 Hb_000035_080 0.2258060933 - - PREDICTED: U-box domain-containing protein 12-like [Jatropha curcas]
15 Hb_000934_150 0.2295795005 - - hypothetical protein POPTR_0005s21000g [Populus trichocarpa]
16 Hb_000581_030 0.2297902288 - - conserved hypothetical protein [Ricinus communis]
17 Hb_004147_070 0.2312124671 - - PREDICTED: probable rhamnogalacturonate lyase B [Jatropha curcas]
18 Hb_007002_040 0.2313021361 transcription factor TF Family: PHD DNA replication regulator dpb11, putative [Ricinus communis]
19 Hb_000307_220 0.2325164848 - - oxidoreductase family protein [Populus trichocarpa]
20 Hb_028872_160 0.2342203043 - - PREDICTED: ATP-dependent DNA helicase Q-like 5 [Jatropha curcas]

Gene co-expression network

sample Hb_004774_030 Hb_004774_030 Hb_000960_090 Hb_000960_090 Hb_004774_030--Hb_000960_090 Hb_003813_060 Hb_003813_060 Hb_004774_030--Hb_003813_060 Hb_001080_050 Hb_001080_050 Hb_004774_030--Hb_001080_050 Hb_001902_200 Hb_001902_200 Hb_004774_030--Hb_001902_200 Hb_000566_130 Hb_000566_130 Hb_004774_030--Hb_000566_130 Hb_000668_060 Hb_000668_060 Hb_004774_030--Hb_000668_060 Hb_000260_650 Hb_000260_650 Hb_000960_090--Hb_000260_650 Hb_000960_090--Hb_000566_130 Hb_000288_090 Hb_000288_090 Hb_000960_090--Hb_000288_090 Hb_000077_110 Hb_000077_110 Hb_000960_090--Hb_000077_110 Hb_006970_130 Hb_006970_130 Hb_000960_090--Hb_006970_130 Hb_093458_020 Hb_093458_020 Hb_000960_090--Hb_093458_020 Hb_004223_140 Hb_004223_140 Hb_003813_060--Hb_004223_140 Hb_006711_090 Hb_006711_090 Hb_003813_060--Hb_006711_090 Hb_004032_210 Hb_004032_210 Hb_003813_060--Hb_004032_210 Hb_003894_030 Hb_003894_030 Hb_003813_060--Hb_003894_030 Hb_011828_040 Hb_011828_040 Hb_003813_060--Hb_011828_040 Hb_000940_210 Hb_000940_210 Hb_003813_060--Hb_000940_210 Hb_000934_150 Hb_000934_150 Hb_001080_050--Hb_000934_150 Hb_001080_050--Hb_093458_020 Hb_000307_220 Hb_000307_220 Hb_001080_050--Hb_000307_220 Hb_124677_030 Hb_124677_030 Hb_001080_050--Hb_124677_030 Hb_000003_060 Hb_000003_060 Hb_001080_050--Hb_000003_060 Hb_001080_050--Hb_000566_130 Hb_001366_170 Hb_001366_170 Hb_001902_200--Hb_001366_170 Hb_004147_070 Hb_004147_070 Hb_001902_200--Hb_004147_070 Hb_001902_200--Hb_003813_060 Hb_001369_630 Hb_001369_630 Hb_001902_200--Hb_001369_630 Hb_000086_290 Hb_000086_290 Hb_001902_200--Hb_000086_290 Hb_003408_010 Hb_003408_010 Hb_001902_200--Hb_003408_010 Hb_000566_130--Hb_093458_020 Hb_000566_130--Hb_000077_110 Hb_004920_050 Hb_004920_050 Hb_000566_130--Hb_004920_050 Hb_000566_130--Hb_000307_220 Hb_002284_260 Hb_002284_260 Hb_000566_130--Hb_002284_260 Hb_000035_080 Hb_000035_080 Hb_000668_060--Hb_000035_080 Hb_000320_050 Hb_000320_050 Hb_000668_060--Hb_000320_050 Hb_003964_080 Hb_003964_080 Hb_000668_060--Hb_003964_080 Hb_000668_060--Hb_000260_650 Hb_074399_010 Hb_074399_010 Hb_000668_060--Hb_074399_010 Hb_000668_060--Hb_000940_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.497799 0.100623 5.08403 5.99139 0.360353 0.715691
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.222712 1.39966 0.824563 1.66967 0.30134

CAGE analysis