Hb_004784_020

Information

Type -
Description -
Location Contig4784: 88381-99967
Sequence    

Annotation

kegg
ID cic:CICLE_v10009829mg
description hypothetical protein
nr
ID XP_012075117.1
description PREDICTED: uncharacterized protein LOC105636452 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID V4U164
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009829mg PE=4 SV=1
Gene Ontology
ID GO:0005634
description hydroxyproline-rich glycoprotein family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44546: 88512-99314 , PASA_asmbl_44547: 92106-92319
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004784_020 0.0 - - PREDICTED: uncharacterized protein LOC105636452 [Jatropha curcas]
2 Hb_078185_010 0.0746056111 - - -
3 Hb_066768_010 0.0774198873 - - PREDICTED: outer envelope pore protein 16-3, chloroplastic/mitochondrial [Jatropha curcas]
4 Hb_001047_240 0.0784439137 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 20-like [Jatropha curcas]
5 Hb_031089_040 0.0812897657 - - thioredoxin H-type 1 [Hevea brasiliensis]
6 Hb_005278_020 0.0832968252 - - PREDICTED: sorcin-like [Jatropha curcas]
7 Hb_019762_020 0.091225359 - - PREDICTED: selenoprotein K-like [Nicotiana tomentosiformis]
8 Hb_026314_020 0.0950640735 - - hypothetical protein POPTR_0019s10050g [Populus trichocarpa]
9 Hb_005667_040 0.0968364771 - - PREDICTED: trafficking protein particle complex subunit 5 [Jatropha curcas]
10 Hb_005867_020 0.1018517688 - - PREDICTED: sm-like protein LSM8 [Jatropha curcas]
11 Hb_000326_090 0.1031292829 - - PREDICTED: glycine-rich RNA-binding protein GRP1A-like [Nelumbo nucifera]
12 Hb_000331_450 0.1036771386 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 6 homolog [Jatropha curcas]
13 Hb_000002_380 0.1043832147 - - PREDICTED: bet1-like SNARE 1-2 [Jatropha curcas]
14 Hb_002207_110 0.1070596113 - - -
15 Hb_002296_040 0.1081204587 - - PREDICTED: DNA-directed RNA polymerase II subunit 4 [Jatropha curcas]
16 Hb_001318_250 0.1088241186 - - PREDICTED: uncharacterized protein LOC105642666 [Jatropha curcas]
17 Hb_002289_120 0.1097730394 - - PREDICTED: uncharacterized protein LOC105645218 isoform X2 [Jatropha curcas]
18 Hb_076693_030 0.1100280252 - - PREDICTED: serine/arginine-rich-splicing factor SR34-like [Populus euphratica]
19 Hb_010042_010 0.1101260646 - - Urease accessory protein ureD, putative [Ricinus communis]
20 Hb_000707_030 0.1121674713 - - PREDICTED: probable proteasome inhibitor [Vitis vinifera]

Gene co-expression network

sample Hb_004784_020 Hb_004784_020 Hb_078185_010 Hb_078185_010 Hb_004784_020--Hb_078185_010 Hb_066768_010 Hb_066768_010 Hb_004784_020--Hb_066768_010 Hb_001047_240 Hb_001047_240 Hb_004784_020--Hb_001047_240 Hb_031089_040 Hb_031089_040 Hb_004784_020--Hb_031089_040 Hb_005278_020 Hb_005278_020 Hb_004784_020--Hb_005278_020 Hb_019762_020 Hb_019762_020 Hb_004784_020--Hb_019762_020 Hb_001817_090 Hb_001817_090 Hb_078185_010--Hb_001817_090 Hb_002289_120 Hb_002289_120 Hb_078185_010--Hb_002289_120 Hb_078185_010--Hb_031089_040 Hb_004306_020 Hb_004306_020 Hb_078185_010--Hb_004306_020 Hb_078185_010--Hb_005278_020 Hb_001250_060 Hb_001250_060 Hb_066768_010--Hb_001250_060 Hb_066768_010--Hb_031089_040 Hb_000326_090 Hb_000326_090 Hb_066768_010--Hb_000326_090 Hb_000083_170 Hb_000083_170 Hb_066768_010--Hb_000083_170 Hb_005867_020 Hb_005867_020 Hb_066768_010--Hb_005867_020 Hb_076693_030 Hb_076693_030 Hb_001047_240--Hb_076693_030 Hb_007875_030 Hb_007875_030 Hb_001047_240--Hb_007875_030 Hb_004162_210 Hb_004162_210 Hb_001047_240--Hb_004162_210 Hb_000331_450 Hb_000331_450 Hb_001047_240--Hb_000331_450 Hb_001318_250 Hb_001318_250 Hb_001047_240--Hb_001318_250 Hb_002207_110 Hb_002207_110 Hb_031089_040--Hb_002207_110 Hb_002296_040 Hb_002296_040 Hb_031089_040--Hb_002296_040 Hb_004502_020 Hb_004502_020 Hb_031089_040--Hb_004502_020 Hb_000003_730 Hb_000003_730 Hb_031089_040--Hb_000003_730 Hb_026314_020 Hb_026314_020 Hb_005278_020--Hb_026314_020 Hb_012022_120 Hb_012022_120 Hb_005278_020--Hb_012022_120 Hb_017413_010 Hb_017413_010 Hb_005278_020--Hb_017413_010 Hb_001016_030 Hb_001016_030 Hb_005278_020--Hb_001016_030 Hb_001842_040 Hb_001842_040 Hb_005278_020--Hb_001842_040 Hb_002411_040 Hb_002411_040 Hb_019762_020--Hb_002411_040 Hb_019762_020--Hb_026314_020 Hb_019762_020--Hb_017413_010 Hb_003025_040 Hb_003025_040 Hb_019762_020--Hb_003025_040 Hb_019762_020--Hb_005278_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.2921 9.71298 18.0763 55.2499 25.0343 41.862
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
53.9493 59.7323 28.167 17.183 11.7805

CAGE analysis